Detailed information of component protein


Summary

Component ID T6CP015536
Component protein type TagH
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (406 a.a.); Nucleotide sequence (1218 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02965
Coordinate (Strand) 453607..454824 (-)
NCBI ID 1119684962
RefSeq NZ_LMTD01000002
Uniprot ID UPI00092C740A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.6e-13 33..101
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-405 MGIVLSITSFHRFTPEIKSVYSIPTNEEHFCMKFGRSESCDWVLPDPERIISGVHGEITKFGNDYLLRDLSTNGIFVNKSVSPVGNGVEVALNDKDVINFGDYEIEVSFKNSENHNVTQSQIHTNTLSPREVNKEPVSGNDNFMDFGFDANLFLAEEEKQQQNLSPELGDLDDFLDAPILSPHIEPTLKEERATDYPRDEKVAKRCERVDSDLNAFLKGAGIDLSLVPEQEREQWFNRLGRSYSLMLEGLMQTLHNRAEFKQANKLNHTSFQKKENNPLKFSANLEDAIHNLYNRRSASFLSPEAAIQSAFNDIDAHEKAMIEGVHGAVSGVLRLLEPNTISGHVSQSEKNGLTSIFSQLDKKRWKKYENIYFQIRNEIDIDEKGFYLEDFSKSYESAIRKVGRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9742 - -


  Protein sequence: 406 a.a.    

>T6CP015536 NZ_LMTD01000002:c454824-453607 [Vibrio vulnificus] [TagH]
MGIVLSITSFHRFTPEIKSVYSIPTNEEHFCMKFGRSESCDWVLPDPERIISGVHGEITKFGNDYLLRDLSTNGIFVNKS
VSPVGNGVEVALNDKDVINFGDYEIEVSFKNSENHNVTQSQIHTNTLSPREVNKEPVSGNDNFMDFGFDANLFLAEEEKQ
QQNLSPELGDLDDFLDAPILSPHIEPTLKEERATDYPRDEKVAKRCERVDSDLNAFLKGAGIDLSLVPEQEREQWFNRLG
RSYSLMLEGLMQTLHNRAEFKQANKLNHTSFQKKENNPLKFSANLEDAIHNLYNRRSASFLSPEAAIQSAFNDIDAHEKA
MIEGVHGAVSGVLRLLEPNTISGHVSQSEKNGLTSIFSQLDKKRWKKYENIYFQIRNEIDIDEKGFYLEDFSKSYESAIR
KVGRE*

  Nucleotide sequence: 1218 bp    

>T6CP015536 NZ_LMTD01000002:c454824-453607 [Vibrio vulnificus] [TagH]
ATGGGAATAGTGCTTTCGATTACTAGTTTCCACCGTTTTACACCAGAAATAAAAAGTGTGTATTCAATACCAACCAATGA
AGAACACTTTTGTATGAAATTTGGTCGCTCTGAGAGCTGTGATTGGGTATTACCTGATCCTGAACGAATTATTTCTGGTG
TTCATGGTGAAATAACTAAGTTTGGTAATGATTATCTACTTAGAGATCTCTCTACAAATGGTATTTTTGTTAATAAGTCA
GTCAGCCCAGTAGGAAATGGTGTCGAAGTGGCTTTAAATGACAAAGATGTGATTAATTTTGGAGATTATGAAATCGAAGT
ATCATTTAAAAATAGTGAAAACCATAACGTAACCCAAAGCCAAATCCACACCAATACTCTGTCACCACGTGAAGTAAATA
AAGAGCCTGTCAGTGGTAATGATAATTTTATGGATTTTGGTTTTGATGCAAACCTATTTTTGGCAGAAGAAGAAAAGCAG
CAGCAAAATCTATCGCCAGAGCTAGGTGATTTGGATGACTTTCTTGATGCTCCCATATTAAGCCCTCACATAGAGCCGAC
TTTGAAAGAAGAGAGAGCGACCGACTATCCTCGTGATGAGAAAGTGGCTAAGCGATGTGAGCGTGTTGACTCGGATTTGA
ACGCCTTTCTCAAGGGGGCTGGCATCGATTTAAGCTTAGTTCCAGAACAGGAAAGAGAGCAATGGTTTAATCGATTAGGT
CGCTCTTATTCTCTCATGTTAGAAGGCCTAATGCAGACGCTGCATAATCGGGCAGAATTTAAACAGGCGAACAAATTAAA
CCATACATCTTTTCAAAAAAAGGAAAATAATCCTCTTAAGTTTTCGGCGAATTTAGAAGATGCAATTCACAATCTATATA
ACAGACGCAGTGCGAGTTTTCTCTCACCGGAAGCTGCAATTCAATCTGCATTCAATGATATAGATGCTCATGAAAAAGCA
ATGATAGAAGGTGTTCATGGTGCTGTATCTGGGGTGTTACGACTGCTTGAACCGAATACCATATCTGGACATGTGTCTCA
AAGTGAAAAAAATGGATTGACATCAATATTTTCGCAACTCGATAAAAAACGATGGAAGAAGTATGAAAATATCTATTTTC
AAATAAGAAATGAAATTGACATTGATGAGAAAGGGTTTTATTTGGAAGACTTTTCCAAATCTTATGAATCGGCAATAAGA
AAAGTAGGGAGAGAATAA