Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01206  |
| T6SS type | Type iv |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon (RefSeq) | chromosome (NC_010830) |
| Location | 713229..728788 |
| Function | - |
| Comment | - |
| References | - |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | T6SSiv-baseplate wedge | T6SSiv-spike | T6SSiv-tube1 | TssF | Unknown |
| Number | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AASI_RS02820 | 709177..709440 | + | 264 | WP_012472718.1 | hypothetical protein | ||
| AASI_RS02825 | 709454..709711 | + | 258 | WP_012472719.1 | hypothetical protein | ||
| AASI_RS02830 | 709737..710129 | + | 393 | WP_012472720.1 | hypothetical protein | ||
| AASI_RS02835 | 710183..710443 | - | 261 | pseudogene | IS3 family transposase | ||
| AASI_RS02840 | 710522..711340 | + | 819 | WP_012472722.1 | IS5/IS1182 family transposase | ||
| AASI_RS02845 | 711426..712370 | - | 945 | WP_012472723.1 | IS481-like element ISCaa11 family transposase | ||
| AASI_RS08790 | 712999..713166 | - | 168 | WP_012472724.1 | hypothetical protein | ||
| T6CP015287 | T6SSiv-tube1 | AASI_RS02850 | 713229..713972 | - | 744 | WP_012472725.1 | hypothetical protein |
| T6CP015288 | TssF | AASI_RS02855 | 713977..717753 | - | 3777 | WP_012472726.1 | baseplate J/gp47 family protein |
| AASI_RS02860 | 717922..718518 | + | 597 | WP_012472727.1 | hypothetical protein | ||
| AASI_RS02865 (thrS) | 718614..720548 | + | 1935 | WP_012472728.1 | threonine--tRNA ligase | ||
| AASI_RS02870 | 720744..721241 | + | 498 | WP_148204997.1 | translation initiation factor IF-3 | ||
| AASI_RS02875 (rpmI) | 721330..721524 | + | 195 | WP_012472730.1 | 50S ribosomal protein L35 | ||
| AASI_RS02880 (rplT) | 721569..721913 | + | 345 | WP_012472731.1 | 50S ribosomal protein L20 | ||
| T6CP015289 | T6SSiv-spike | AASI_RS02890 | 722849..726205 | + | 3357 | WP_187146293.1 | HD domain-containing protein |
| T6CP015290 | Unknown | AASI_RS02895 | 726478..727422 | - | 945 | WP_012472733.1 | PhoH family protein |
| T6CP015291 | T6SSiv-baseplate wedge | AASI_RS02900 | 727475..728788 | - | 1314 | WP_187146294.1 | lytic transglycosylase domain-containing protein |
| AASI_RS02905 | 728896..729543 | - | 648 | WP_012472735.1 | O-methyltransferase | ||
| AASI_RS02910 | 729576..730466 | - | 891 | WP_044282768.1 | YicC family protein | ||
| AASI_RS02915 | 730580..730960 | - | 381 | WP_187146295.1 | phosphatase PAP2 family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|