Detailed information of component protein


Summary

Component ID T6CP015288
Component protein type TssF
T6SS ID (Type) T6SS01206 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (1259 a.a.); Nucleotide sequence (3777 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AASI_RS02855
Coordinate (Strand) 713977..717753 (-)
NCBI ID WP_012472726.1
RefSeq NC_010830
Uniprot ID B3ERV6_AMOA5
KEGG ID aas:Aasi_0557
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Baseplate_J PF04865.16 1.8e-08 962..1119
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1258 MNIEDKKQSLLFKRGGTCQEERLLQGLLNNDRLIDSKGLDEYIVFTYLYSDLLKFYENQNESVNYNAWRSFIEFDDTTIHSLILHTQLNKLKEPISNYFLALKRIKSIELDNKHLKGLLSTLEEILLLFNYWHENLSEESVVKLEIYNLIRYELNGDITFLYNLLKQESNRGLTNPPIPFFKFIESLWDKHEIWERNLTGLDEGLDAVTMHQQVQNTLNDLFDSIFNGMANLQKLAGENYTSTLISQQHRPQAALIIAFLRLLEYAIVHMNHIPQRHLDYYYREVLKFSEEPVKPDKVYVHFLLKENKKNFLLAKGLQLTAGKDEAGQDIIFETDKSLVVSQAKISRIHTFNLLTQTHDSDESFPKIDLDVATYEPEAIYQQKKYLNLFSNDTSAQITTLGPIGFLIASPILYLKEGKRKITLGFKFEKKTFEALVQSVKEGDTVASNEVYDKLASRFNETITVQATTEEGWTSIPQNSVSTTVKSEKSYLEITLMLMPDILPIVKFSSELHGELDRIEAPSLRILLHPESPLAYIFLFKEVALERLTINVDVTDYRGLVLQNDLGLIDTSQPFQPFGPFPKLHSNFYIGSDEIFYKDLTNFKINITWVGLPTMDNGFKKYYEAYPGKITNQDFQINVSYLKHRQWNPFYPENRQKIALFEVEKKLANTVENLKEKRTIGEIDFDKLGLLRQIYALNPPVWTAKTLTGFLKLELDGPDMAFGHTIYPTVLAQTTILNDKNKHKKQVDVPILNEPYTPVIKSLSVDYSAQDQIYLKKAHEPANQNSLKRYIKLMPFGYKAEFPKATKDFAHTINADTGECFFTLGIQNLNASIMRLHIQVDEGGINPDSEFTKPTWSYLSDNNWVNFKENEIIADETMGLTKSGIIVFIIPTAANDSNTLMSTGLIWIRGNFPPNSSSLPKILGMYTQAVSATRKIDTSKNSEQPTRLPAYTIQGILGSSIAIESVVQPFPSFGGKPAETQTKLYTRISERLRHKDRAISAWDYERIVLERFPEIFRVKCINHSRKNQPFVLQPGRVTLVVIPTIKEAILGKNSLPQASKQLLESIKQELQKSASPFVSIEVINPVYEEVRVNLEVKFKRGYEKGIYSNELQRAIKSFLSPWLFNKSEDIRLGVIIPSSKIMDFISKRYYVEAIGNFSILKYTGSNITKITDYDNQLMSTYSWSVMFSSDNHRITVVDNIDPNSNLRYGGVDDMSVEDDFIIGPWKSNSEQKWIEEVQEEEIQESLEEYYLITKKYIKH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9937 - -


  Protein sequence: 1259 a.a.    

>T6CP015288 NC_010830:c717753-713977 [Candidatus Amoebophilus asiaticus 5a2] [TssF]
MNIEDKKQSLLFKRGGTCQEERLLQGLLNNDRLIDSKGLDEYIVFTYLYSDLLKFYENQNESVNYNAWRSFIEFDDTTIH
SLILHTQLNKLKEPISNYFLALKRIKSIELDNKHLKGLLSTLEEILLLFNYWHENLSEESVVKLEIYNLIRYELNGDITF
LYNLLKQESNRGLTNPPIPFFKFIESLWDKHEIWERNLTGLDEGLDAVTMHQQVQNTLNDLFDSIFNGMANLQKLAGENY
TSTLISQQHRPQAALIIAFLRLLEYAIVHMNHIPQRHLDYYYREVLKFSEEPVKPDKVYVHFLLKENKKNFLLAKGLQLT
AGKDEAGQDIIFETDKSLVVSQAKISRIHTFNLLTQTHDSDESFPKIDLDVATYEPEAIYQQKKYLNLFSNDTSAQITTL
GPIGFLIASPILYLKEGKRKITLGFKFEKKTFEALVQSVKEGDTVASNEVYDKLASRFNETITVQATTEEGWTSIPQNSV
STTVKSEKSYLEITLMLMPDILPIVKFSSELHGELDRIEAPSLRILLHPESPLAYIFLFKEVALERLTINVDVTDYRGLV
LQNDLGLIDTSQPFQPFGPFPKLHSNFYIGSDEIFYKDLTNFKINITWVGLPTMDNGFKKYYEAYPGKITNQDFQINVSY
LKHRQWNPFYPENRQKIALFEVEKKLANTVENLKEKRTIGEIDFDKLGLLRQIYALNPPVWTAKTLTGFLKLELDGPDMA
FGHTIYPTVLAQTTILNDKNKHKKQVDVPILNEPYTPVIKSLSVDYSAQDQIYLKKAHEPANQNSLKRYIKLMPFGYKAE
FPKATKDFAHTINADTGECFFTLGIQNLNASIMRLHIQVDEGGINPDSEFTKPTWSYLSDNNWVNFKENEIIADETMGLT
KSGIIVFIIPTAANDSNTLMSTGLIWIRGNFPPNSSSLPKILGMYTQAVSATRKIDTSKNSEQPTRLPAYTIQGILGSSI
AIESVVQPFPSFGGKPAETQTKLYTRISERLRHKDRAISAWDYERIVLERFPEIFRVKCINHSRKNQPFVLQPGRVTLVV
IPTIKEAILGKNSLPQASKQLLESIKQELQKSASPFVSIEVINPVYEEVRVNLEVKFKRGYEKGIYSNELQRAIKSFLSP
WLFNKSEDIRLGVIIPSSKIMDFISKRYYVEAIGNFSILKYTGSNITKITDYDNQLMSTYSWSVMFSSDNHRITVVDNID
PNSNLRYGGVDDMSVEDDFIIGPWKSNSEQKWIEEVQEEEIQESLEEYYLITKKYIKH*

  Nucleotide sequence: 3777 bp    

>T6CP015288 NC_010830:c717753-713977 [Candidatus Amoebophilus asiaticus 5a2] [TssF]
ATGAATATAGAGGATAAAAAACAGAGTTTACTTTTTAAACGAGGTGGGACTTGCCAAGAGGAAAGATTATTACAAGGTTT
ACTTAACAATGATAGGTTAATAGACAGCAAAGGTTTAGATGAATATATTGTATTTACTTATCTATATAGCGATCTGCTTA
AATTCTATGAGAACCAAAATGAATCTGTCAACTATAATGCATGGAGGAGTTTTATAGAATTTGACGATACAACTATCCAT
TCGCTTATTCTTCATACGCAGCTCAATAAGCTTAAAGAACCTATTAGCAATTATTTCTTGGCACTAAAACGTATTAAGTC
CATAGAATTAGATAACAAACATCTAAAAGGGTTACTGTCTACACTAGAGGAAATTCTATTATTATTTAACTATTGGCATG
AAAACCTATCTGAAGAAAGTGTAGTTAAATTGGAGATCTATAACCTAATACGGTATGAACTAAATGGGGATATTACTTTC
TTATACAACTTATTAAAACAAGAATCCAATAGGGGCCTAACCAATCCTCCTATACCCTTTTTTAAATTTATAGAAAGCCT
ATGGGATAAACATGAAATTTGGGAGAGGAACCTAACGGGTTTAGATGAAGGCTTAGATGCTGTGACAATGCATCAACAAG
TACAAAATACGCTAAACGATCTGTTTGACAGTATTTTTAATGGTATGGCCAATTTACAAAAATTGGCTGGAGAAAATTAT
ACTTCTACATTAATAAGCCAGCAACATAGACCCCAAGCTGCACTAATTATAGCCTTTTTAAGGCTATTAGAATATGCCAT
AGTGCATATGAATCATATTCCACAACGCCATTTAGACTATTACTATAGAGAAGTCTTAAAATTTAGTGAAGAGCCGGTAA
AGCCTGACAAAGTATATGTACATTTCCTCCTAAAAGAGAATAAAAAGAATTTTCTTCTAGCAAAAGGATTACAGCTGACT
GCCGGTAAAGACGAGGCAGGGCAAGATATTATTTTCGAAACAGATAAATCATTAGTTGTCAGCCAAGCTAAAATTAGCCG
CATTCATACCTTTAACTTATTAACCCAAACACATGACTCAGATGAAAGCTTTCCTAAAATAGATCTTGATGTAGCTACTT
ATGAACCAGAAGCTATTTATCAACAGAAAAAATATTTAAATCTTTTCTCAAACGATACATCTGCACAAATAACAACATTA
GGGCCCATAGGCTTTTTGATTGCTTCTCCTATTTTATACCTCAAAGAAGGAAAAAGAAAAATAACCCTAGGGTTCAAGTT
TGAAAAAAAGACTTTCGAGGCCTTAGTACAATCAGTAAAGGAAGGAGATACTGTTGCTTCTAATGAAGTTTATGATAAAC
TGGCTAGTAGATTTAATGAAACCATTACTGTACAGGCAACCACTGAAGAAGGATGGACTAGCATACCTCAAAATTCCGTT
AGCACTACTGTAAAAAGTGAAAAGAGTTACTTAGAGATTACCCTCATGCTAATGCCAGATATACTTCCTATTGTAAAGTT
TAGCAGTGAGTTACATGGAGAATTAGATAGAATTGAGGCTCCTAGCCTTCGTATTTTATTGCATCCAGAATCGCCATTAG
CTTATATTTTCTTATTTAAAGAAGTAGCTCTTGAAAGGCTAACTATCAACGTTGATGTAACAGATTACAGGGGTCTTGTC
TTACAAAACGATCTAGGATTGATTGATACTAGTCAACCTTTTCAACCTTTTGGACCTTTTCCTAAACTCCACTCTAATTT
TTATATAGGAAGCGATGAGATATTCTATAAAGATCTAACAAATTTTAAAATTAATATTACTTGGGTAGGACTACCTACTA
TGGATAATGGATTTAAAAAGTATTATGAAGCCTACCCAGGAAAAATAACCAACCAAGACTTCCAAATAAATGTCTCTTAT
CTAAAACATAGGCAATGGAATCCATTCTACCCAGAAAATAGACAAAAAATTGCCTTATTTGAAGTTGAGAAGAAACTTGC
TAATACCGTAGAAAACTTAAAAGAGAAACGGACAATTGGCGAAATAGATTTCGATAAGCTTGGCTTACTCAGACAAATAT
ATGCTCTTAATCCTCCCGTATGGACAGCTAAGACACTAACAGGATTTCTTAAGTTAGAACTTGATGGACCTGATATGGCA
TTTGGGCATACTATCTACCCTACCGTATTAGCCCAGACCACCATACTGAATGATAAAAATAAGCATAAAAAACAAGTCGA
TGTTCCCATACTTAATGAACCATATACACCAGTTATCAAGTCATTAAGTGTAGACTATAGTGCGCAAGACCAAATTTATC
TTAAAAAGGCACATGAACCAGCCAATCAAAACTCCCTTAAGCGATACATAAAATTGATGCCTTTTGGATATAAAGCTGAG
TTTCCTAAAGCGACCAAGGATTTTGCACATACCATTAATGCAGATACAGGGGAATGCTTTTTTACGCTAGGTATCCAAAA
CCTGAATGCTTCTATCATGCGCTTACATATTCAAGTGGACGAGGGTGGCATTAATCCTGATAGTGAATTTACTAAGCCTA
CTTGGAGCTATTTATCAGACAACAACTGGGTTAATTTTAAGGAAAATGAAATTATTGCAGATGAAACCATGGGGCTTACT
AAATCTGGTATTATTGTTTTTATAATACCTACTGCTGCTAACGATAGCAATACATTGATGAGCACAGGGCTTATATGGAT
TAGAGGTAATTTTCCACCTAACTCATCTTCTCTACCCAAAATATTAGGTATGTATACCCAAGCTGTATCAGCCACTAGAA
AGATTGACACTTCTAAAAACAGCGAGCAACCTACTAGATTACCTGCCTACACTATACAAGGCATTCTAGGTAGCTCTATA
GCTATAGAGTCTGTGGTGCAACCTTTCCCATCATTTGGTGGAAAACCAGCCGAGACACAAACTAAATTGTATACAAGAAT
TAGTGAACGTTTAAGGCACAAAGATAGAGCCATTTCCGCTTGGGATTATGAAAGAATTGTATTAGAGAGATTTCCTGAAA
TATTTCGTGTAAAATGTATCAATCATTCAAGAAAAAACCAACCATTTGTACTTCAGCCAGGCAGAGTAACCTTAGTAGTA
ATTCCTACTATTAAAGAAGCTATCTTAGGTAAAAACTCTTTACCACAAGCAAGCAAGCAGCTATTAGAATCCATTAAGCA
AGAATTGCAAAAATCAGCTTCTCCTTTTGTATCTATTGAAGTCATCAACCCTGTATATGAAGAAGTAAGGGTAAACTTAG
AGGTAAAATTTAAAAGAGGGTATGAAAAAGGCATATATTCTAATGAGTTACAAAGAGCTATCAAAAGCTTTCTTTCACCT
TGGTTGTTTAACAAATCTGAAGATATCCGCTTGGGAGTGATTATTCCTTCTTCAAAAATTATGGATTTTATTAGTAAGCG
ATATTATGTGGAAGCTATCGGAAATTTCTCTATATTAAAATATACAGGGTCAAACATTACAAAGATTACAGATTATGACA
ACCAACTCATGTCTACTTATTCTTGGTCTGTTATGTTTTCTTCTGATAACCATAGAATAACAGTAGTAGATAACATTGAC
CCTAATTCCAATCTACGTTACGGTGGTGTAGACGATATGAGTGTTGAAGATGATTTTATCATAGGCCCTTGGAAATCCAA
TTCAGAACAGAAATGGATAGAGGAGGTGCAGGAAGAAGAAATACAAGAAAGTCTAGAAGAATATTATTTAATAACCAAGA
AATACATTAAGCATTAA