Detailed information of component protein


Summary

Component ID T6CP015291
Component protein type T6SSiv-baseplate wedge
T6SS ID (Type) T6SS01206 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (438 a.a.); Nucleotide sequence (1314 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AASI_RS02900
Coordinate (Strand) 727475..728788 (-)
NCBI ID WP_187146294.1
RefSeq NC_010830
Uniprot ID UPI000300143A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
SLT PF01464.22 4.2e-11 43..145
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-437 MQLYIAAEAKEEIQKKVTSLTRSPKHYKEVFDRINLYMPLIERVLKEEGLPDDLKYLAIQESHLIADDISETNAVGFWQFKQAGALEVGTRIDRYIDERMHIVASTRAFAKYIKKHYSHFNNWLYSLLAFHLGRGGAKTFIKGNKWNIGARTATIDSHAHWYIYHFIAHKLVFKDAIGKELHPELYLYECRDCQGKTIHELSQQFGVSLPMIRTYNKWLKPTKIPEDATCSVLIPMTHQQYAQLDHLRVYSLLDKYKINYSAYWDKAQNFPCITSAKSTNKSQPTIQINGINGIVAQPNDNLTTLATKGNIPLKQFLEFNDIDAKHQIEIGQAYYFKAKNNRANVHYHIVRHKETWWSIAQKYGIKLSSLLSKNRARKALTLTAGRVLWLRFMRPANIPIAYLNDPIINNAPSKPDVAQTYAVTENTTTYFKKGSNN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9968 - -


  Protein sequence: 438 a.a.    

>T6CP015291 NC_010830:c728788-727475 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-baseplate wedge]
MQLYIAAEAKEEIQKKVTSLTRSPKHYKEVFDRINLYMPLIERVLKEEGLPDDLKYLAIQESHLIADDISETNAVGFWQF
KQAGALEVGTRIDRYIDERMHIVASTRAFAKYIKKHYSHFNNWLYSLLAFHLGRGGAKTFIKGNKWNIGARTATIDSHAH
WYIYHFIAHKLVFKDAIGKELHPELYLYECRDCQGKTIHELSQQFGVSLPMIRTYNKWLKPTKIPEDATCSVLIPMTHQQ
YAQLDHLRVYSLLDKYKINYSAYWDKAQNFPCITSAKSTNKSQPTIQINGINGIVAQPNDNLTTLATKGNIPLKQFLEFN
DIDAKHQIEIGQAYYFKAKNNRANVHYHIVRHKETWWSIAQKYGIKLSSLLSKNRARKALTLTAGRVLWLRFMRPANIPI
AYLNDPIINNAPSKPDVAQTYAVTENTTTYFKKGSNN*

  Nucleotide sequence: 1314 bp    

>T6CP015291 NC_010830:c728788-727475 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-baseplate wedge]
ATGCAATTATATATAGCAGCAGAAGCCAAAGAAGAAATACAAAAAAAGGTAACATCTTTAACCCGCAGCCCTAAACACTA
TAAAGAAGTTTTTGACCGTATCAATTTATACATGCCTCTTATAGAAAGAGTTTTAAAAGAAGAAGGGCTACCAGATGATT
TAAAGTATTTAGCCATACAAGAAAGCCATTTGATAGCTGATGATATTTCTGAGACCAATGCAGTAGGATTTTGGCAATTT
AAGCAAGCAGGTGCTTTAGAAGTAGGTACAAGAATAGACCGTTATATTGATGAACGGATGCATATCGTTGCTTCTACTAG
AGCATTTGCCAAATATATTAAGAAGCATTATAGCCATTTTAACAATTGGCTATATTCACTATTGGCGTTTCATTTAGGAA
GAGGTGGCGCAAAGACATTTATTAAAGGGAATAAATGGAATATTGGTGCTAGAACAGCAACAATAGATAGTCATGCTCAT
TGGTATATATATCACTTTATAGCGCATAAGCTTGTATTTAAAGATGCGATAGGTAAAGAACTGCATCCAGAACTATACCT
GTATGAATGTCGAGATTGTCAGGGGAAAACCATTCATGAACTTAGCCAACAATTTGGTGTATCTTTACCGATGATACGTA
CCTACAATAAGTGGTTAAAGCCTACTAAAATACCAGAAGATGCGACCTGTTCTGTACTGATACCCATGACACACCAACAA
TATGCGCAGCTTGACCATTTACGTGTATATAGCCTCTTGGATAAATATAAGATAAATTACAGTGCTTATTGGGACAAAGC
TCAAAATTTTCCTTGTATTACCTCTGCAAAAAGTACAAACAAAAGCCAGCCAACTATACAAATCAATGGTATTAATGGTA
TTGTTGCGCAACCTAACGATAATTTAACTACCCTTGCAACTAAGGGGAATATTCCTTTAAAACAATTTTTAGAATTTAAT
GATATTGATGCCAAGCATCAGATAGAAATAGGACAAGCATATTATTTTAAAGCTAAAAACAATAGAGCCAATGTACACTA
CCATATTGTAAGACACAAAGAAACTTGGTGGAGCATAGCTCAGAAGTATGGTATAAAGTTATCATCTCTATTGTCTAAAA
ACAGAGCTCGAAAAGCATTGACACTTACAGCTGGCAGAGTACTTTGGCTACGCTTTATGAGGCCTGCTAATATACCTATT
GCCTATTTAAATGACCCAATAATTAATAACGCACCTTCTAAACCTGATGTAGCACAAACCTATGCTGTAACAGAAAATAC
AACTACATACTTTAAAAAGGGTTCTAATAATTAG