Detailed information of component protein
Summary
| Component ID | T6CP015287 |
| Component protein type | T6SSiv-tube1 |
| T6SS ID (Type) | T6SS01206  (Type iv) |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon | chromosome |
| Sequence | Protein sequence (248 a.a.); Nucleotide sequence (744 bp) |
| Reference | - |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AASI_RS02850 |
| Coordinate (Strand) | 713229..713972 (-) |
| NCBI ID | WP_012472725.1 |
| RefSeq | NC_010830 |
| Uniprot ID | B3ERV5_AMOA5 |
| KEGG ID | aas:Aasi_0556 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-247 | MSIASRVQLKKAFEKGAIPTEQDFSNLIDSMIHKQEDGLISEDEGLRLSPKGSDRRLLTFFDNLNGFKPSWAIEQYPKNSSEFGLNLVDQQGESKLFIRYDGNVGIGTLNPTNKLEVNGNMSMHGRRGTYMSGQVPGDGSWYTITPKLSQCHAFEIIAKVSKAGRGLHAMLHAFALSTFKGSKSPITKTHAYYNSFRDKIDIRWAGTNFNYALQIKTKRNYGAGNMISYYITNLWWEEGEESVKESK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9941 | - | - |
Protein sequence: 248 a.a.
>T6CP015287 NC_010830:c713972-713229 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tube1]
MSIASRVQLKKAFEKGAIPTEQDFSNLIDSMIHKQEDGLISEDEGLRLSPKGSDRRLLTFFDNLNGFKPSWAIEQYPKNS
SEFGLNLVDQQGESKLFIRYDGNVGIGTLNPTNKLEVNGNMSMHGRRGTYMSGQVPGDGSWYTITPKLSQCHAFEIIAKV
SKAGRGLHAMLHAFALSTFKGSKSPITKTHAYYNSFRDKIDIRWAGTNFNYALQIKTKRNYGAGNMISYYITNLWWEEGE
ESVKESK*
MSIASRVQLKKAFEKGAIPTEQDFSNLIDSMIHKQEDGLISEDEGLRLSPKGSDRRLLTFFDNLNGFKPSWAIEQYPKNS
SEFGLNLVDQQGESKLFIRYDGNVGIGTLNPTNKLEVNGNMSMHGRRGTYMSGQVPGDGSWYTITPKLSQCHAFEIIAKV
SKAGRGLHAMLHAFALSTFKGSKSPITKTHAYYNSFRDKIDIRWAGTNFNYALQIKTKRNYGAGNMISYYITNLWWEEGE
ESVKESK*
Nucleotide sequence: 744 bp
>T6CP015287 NC_010830:c713972-713229 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tube1]
ATGTCCATAGCTAGCAGAGTACAGCTCAAAAAAGCTTTTGAAAAAGGTGCTATTCCTACAGAACAAGATTTTAGCAACCT
AATAGACTCAATGATTCATAAACAGGAAGATGGATTAATTTCAGAAGACGAAGGTTTAAGGCTTTCTCCTAAAGGGAGTG
ATAGAAGACTACTTACATTCTTTGATAATCTGAATGGATTTAAACCTTCTTGGGCAATTGAGCAATACCCTAAAAACAGC
TCAGAGTTCGGTCTTAACTTAGTAGATCAGCAAGGAGAAAGCAAGCTATTTATTCGTTATGATGGAAATGTGGGTATTGG
AACTTTAAATCCTACTAACAAATTAGAGGTAAATGGCAACATGAGTATGCATGGTCGTCGTGGCACTTATATGTCTGGAC
AAGTACCAGGTGACGGAAGCTGGTATACTATTACTCCTAAACTTAGCCAATGCCATGCTTTTGAAATTATTGCTAAAGTA
AGTAAGGCAGGTAGAGGTCTACATGCTATGTTACATGCATTTGCCTTAAGCACATTTAAAGGTTCTAAAAGCCCAATTAC
AAAGACACATGCCTACTATAATAGCTTTAGGGATAAAATAGACATACGATGGGCAGGAACTAATTTTAATTATGCATTGC
AAATAAAAACCAAGCGCAATTATGGAGCAGGCAATATGATTTCTTACTATATTACTAATCTTTGGTGGGAAGAAGGTGAA
GAGAGTGTGAAAGAAAGTAAGTAA
ATGTCCATAGCTAGCAGAGTACAGCTCAAAAAAGCTTTTGAAAAAGGTGCTATTCCTACAGAACAAGATTTTAGCAACCT
AATAGACTCAATGATTCATAAACAGGAAGATGGATTAATTTCAGAAGACGAAGGTTTAAGGCTTTCTCCTAAAGGGAGTG
ATAGAAGACTACTTACATTCTTTGATAATCTGAATGGATTTAAACCTTCTTGGGCAATTGAGCAATACCCTAAAAACAGC
TCAGAGTTCGGTCTTAACTTAGTAGATCAGCAAGGAGAAAGCAAGCTATTTATTCGTTATGATGGAAATGTGGGTATTGG
AACTTTAAATCCTACTAACAAATTAGAGGTAAATGGCAACATGAGTATGCATGGTCGTCGTGGCACTTATATGTCTGGAC
AAGTACCAGGTGACGGAAGCTGGTATACTATTACTCCTAAACTTAGCCAATGCCATGCTTTTGAAATTATTGCTAAAGTA
AGTAAGGCAGGTAGAGGTCTACATGCTATGTTACATGCATTTGCCTTAAGCACATTTAAAGGTTCTAAAAGCCCAATTAC
AAAGACACATGCCTACTATAATAGCTTTAGGGATAAAATAGACATACGATGGGCAGGAACTAATTTTAATTATGCATTGC
AAATAAAAACCAAGCGCAATTATGGAGCAGGCAATATGATTTCTTACTATATTACTAATCTTTGGTGGGAAGAAGGTGAA
GAGAGTGTGAAAGAAAGTAAGTAA