Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00909  |
| T6SS type | Type iii |
| Strain | Bacteroides fragilis YCH46 |
| Replicon (RefSeq) | chromosome (NC_006347) |
| Location | 3238391..3255873 |
| Function | anti-bacterial |
| Comment | - |
| References | [1] Ross BD, Verster AJ, Radey MC, Schmidtke DT, Pope CE, Hoffman LR, Hajjar AM, Peterson SB, Borenstein E, Mougous JD. et al (2019) Human gut bacteria contain acquired interbacterial defence systems.. Nature. 575(7781):224-228. [PudMed:31666699] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssN | TssO | TssP |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BF_RS13455 | 3233545..3234300 | - | 756 | WP_009041028.1 | ParA family protein | ||
| BF_RS13460 | 3234541..3234954 | - | 414 | WP_009017601.1 | single-stranded DNA-binding protein | ||
| BF_RS13465 | 3235737..3236513 | - | 777 | WP_011203021.1 | TetR/AcrR family transcriptional regulator | ||
| BF_RS13470 | 3237083..3237658 | - | 576 | WP_011203022.1 | hypothetical protein | ||
| BF_RS13475 | 3237664..3238278 | - | 615 | WP_004310153.1 | hypothetical protein | ||
| T6CP011076 | TssC | BF_RS13480 | 3238391..3239770 | - | 1380 | WP_004310152.1 | DUF5458 family protein |
| T6CP011077 | TssB | BF_RS13485 | 3239783..3240250 | - | 468 | WP_004310151.1 | hypothetical protein |
| T6CP011078 | TssE | BF_RS13490 | 3240418..3240840 | + | 423 | WP_004310150.1 | GPW/gp25 family protein |
| T6CP011079 | TssF | BF_RS13495 | 3240848..3242623 | + | 1776 | WP_011203023.1 | type VI secretion system baseplate subunit TssF |
| T6CP011080 | TssH | BF_RS13500 | 3242620..3245058 | + | 2439 | WP_011203024.1 | ATP-dependent Clp protease ATP-binding subunit |
| T6CP011081 | TssG | BF_RS13505 | 3245043..3245978 | + | 936 | WP_005777320.1 | hypothetical protein |
| T6CP011082 | TssN | BF_RS13510 | 3245992..3246870 | + | 879 | WP_004322089.1 | hypothetical protein |
| T6CP011083 | TssK | BF_RS13515 | 3246874..3248022 | + | 1149 | WP_004322091.1 | hypothetical protein |
| T6CP011084 | TssO | BF_RS13520 | 3248043..3248540 | + | 498 | WP_005777317.1 | hypothetical protein |
| T6CP011085 | TssO | BF_RS13525 | 3248537..3248983 | + | 447 | WP_004310143.1 | hypothetical protein |
| T6CP011086 | TssP | BF_RS13530 | 3248994..3249935 | + | 942 | WP_004310142.1 | PKD domain-containing protein |
| BF_RS13535 | 3249932..3252280 | + | 2349 | WP_011203025.1 | hypothetical protein | ||
| BF_RS13540 | 3252286..3253089 | + | 804 | WP_004310140.1 | DUF5457 domain-containing protein | ||
| T6CP011087 | TssD | BF_RS13545 | 3253604..3253999 | + | 396 | WP_004310139.1 | hypothetical protein |
| T6CP011088 | TssI | BF_RS13550 | 3254110..3255873 | + | 1764 | WP_005777303.1 | type IV secretion protein Rhs |
| BF_RS13555 | 3255880..3257256 | + | 1377 | WP_005777300.1 | hypothetical protein | ||
| BF_RS13560 | 3257222..3257509 | + | 288 | WP_028728591.1 | immunity 17 family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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