Detailed information of component protein


Summary

Component ID T6CP011085
Component protein type TssO
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (149 a.a.); Nucleotide sequence (447 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BF_RS13525
Coordinate (Strand) 3248537..3248983 (+)
NCBI ID WP_004310143.1
RefSeq NC_006347
Uniprot ID G6AUG5_9BACT, A0A0F5JTP7_9BACT, A0A078RB96_PHOVU, A0A223HPL1_9BACT, A0A5M5BER4_BACOV, Q64SE0_BACFR, A0A3E4MYL3_9BACT, A0A076IPQ3_9BACT, A0A415GH49_9BACT, A0A412VNA7_9BACE, F7LYZ3_9BACE, A0A3R6EF61_9BACT, A0A414PPL6_BACSE, C3QWD0_9BACE, A0A174WR91_9BACE, S0FD14_9BACT, D7JAG0_9BACE, D4WGQ6_BACOV, D4VMV4_9BACE, D1JMF4_BACFG, A0A412X877_BACUN, A0A3E4WJT5_PHOVU, A0A3E4MPQ4_9BACT, I8Y8S7_BACOV
KEGG ID bdo:EL88_14290, parc:CI960_13820, bfr:BF2840
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssO PF17561.4 4.2e-25 1..148

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MTKDEMLWGNIR
Transmembrane helix 13-35 FLLLLIFSVAAIYIILCRYILNV
Outside 36-148 PTEDSSELINEINHSERIFEIQHTHMQQAQNIWNEIDSLDFNIHQVQKMDEVKDGIYQLQHIYKENNMNTKFLFGVLSSRMLKCQFDIKEELNSLVHNNALIERDLEECKANL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9846 - -



  Protein sequence: 149 a.a.    

>T6CP011085 NC_006347:3248537-3248983 [Bacteroides fragilis YCH46] [TssO]
MTKDEMLWGNIRFLLLLIFSVAAIYIILCRYILNVPTEDSSELINEINHSERIFEIQHTHMQQAQNIWNEIDSLDFNIHQ
VQKMDEVKDGIYQLQHIYKENNMNTKFLFGVLSSRMLKCQFDIKEELNSLVHNNALIERDLEECKANL*

  Nucleotide sequence: 447 bp    

>T6CP011085 NC_006347:3248537-3248983 [Bacteroides fragilis YCH46] [TssO]
ATGACAAAAGACGAAATGCTATGGGGAAACATCCGTTTCCTCCTGCTGCTGATTTTCTCAGTAGCCGCAATTTATATCAT
ACTTTGCCGGTATATACTCAACGTACCGACAGAGGACAGTTCGGAGTTGATAAACGAAATCAACCATTCCGAACGCATTT
TTGAAATCCAGCATACACATATGCAGCAGGCGCAGAACATCTGGAATGAGATTGACTCTCTGGACTTCAACATTCATCAG
GTACAAAAGATGGACGAGGTGAAGGATGGGATTTACCAATTGCAGCATATATACAAGGAAAACAATATGAATACGAAATT
CCTTTTCGGCGTGTTGTCCTCCAGAATGCTTAAATGCCAATTCGACATAAAAGAGGAATTGAACAGTCTGGTACATAACA
ATGCACTGATTGAACGGGATTTGGAAGAATGTAAAGCCAATTTATAA