Detailed information of component protein
Summary
| Component ID | T6CP011085 |
| Component protein type | TssO |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (149 a.a.); Nucleotide sequence (447 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS13525 |
| Coordinate (Strand) | 3248537..3248983 (+) |
| NCBI ID | WP_004310143.1 |
| RefSeq | NC_006347 |
| Uniprot ID | G6AUG5_9BACT, A0A0F5JTP7_9BACT, A0A078RB96_PHOVU, A0A223HPL1_9BACT, A0A5M5BER4_BACOV, Q64SE0_BACFR, A0A3E4MYL3_9BACT, A0A076IPQ3_9BACT, A0A415GH49_9BACT, A0A412VNA7_9BACE, F7LYZ3_9BACE, A0A3R6EF61_9BACT, A0A414PPL6_BACSE, C3QWD0_9BACE, A0A174WR91_9BACE, S0FD14_9BACT, D7JAG0_9BACE, D4WGQ6_BACOV, D4VMV4_9BACE, D1JMF4_BACFG, A0A412X877_BACUN, A0A3E4WJT5_PHOVU, A0A3E4MPQ4_9BACT, I8Y8S7_BACOV |
| KEGG ID | bdo:EL88_14290, parc:CI960_13820, bfr:BF2840 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssO | PF17561.4 | 4.2e-25 | 1..148 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MTKDEMLWGNIR |
| Transmembrane helix | 13-35 | FLLLLIFSVAAIYIILCRYILNV |
| Outside | 36-148 | PTEDSSELINEINHSERIFEIQHTHMQQAQNIWNEIDSLDFNIHQVQKMDEVKDGIYQLQHIYKENNMNTKFLFGVLSSRMLKCQFDIKEELNSLVHNNALIERDLEECKANL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9846 | - | - |
Protein sequence: 149 a.a.
>T6CP011085 NC_006347:3248537-3248983 [Bacteroides fragilis YCH46] [TssO]
MTKDEMLWGNIRFLLLLIFSVAAIYIILCRYILNVPTEDSSELINEINHSERIFEIQHTHMQQAQNIWNEIDSLDFNIHQ
VQKMDEVKDGIYQLQHIYKENNMNTKFLFGVLSSRMLKCQFDIKEELNSLVHNNALIERDLEECKANL*
MTKDEMLWGNIRFLLLLIFSVAAIYIILCRYILNVPTEDSSELINEINHSERIFEIQHTHMQQAQNIWNEIDSLDFNIHQ
VQKMDEVKDGIYQLQHIYKENNMNTKFLFGVLSSRMLKCQFDIKEELNSLVHNNALIERDLEECKANL*
Nucleotide sequence: 447 bp
>T6CP011085 NC_006347:3248537-3248983 [Bacteroides fragilis YCH46] [TssO]
ATGACAAAAGACGAAATGCTATGGGGAAACATCCGTTTCCTCCTGCTGCTGATTTTCTCAGTAGCCGCAATTTATATCAT
ACTTTGCCGGTATATACTCAACGTACCGACAGAGGACAGTTCGGAGTTGATAAACGAAATCAACCATTCCGAACGCATTT
TTGAAATCCAGCATACACATATGCAGCAGGCGCAGAACATCTGGAATGAGATTGACTCTCTGGACTTCAACATTCATCAG
GTACAAAAGATGGACGAGGTGAAGGATGGGATTTACCAATTGCAGCATATATACAAGGAAAACAATATGAATACGAAATT
CCTTTTCGGCGTGTTGTCCTCCAGAATGCTTAAATGCCAATTCGACATAAAAGAGGAATTGAACAGTCTGGTACATAACA
ATGCACTGATTGAACGGGATTTGGAAGAATGTAAAGCCAATTTATAA
ATGACAAAAGACGAAATGCTATGGGGAAACATCCGTTTCCTCCTGCTGCTGATTTTCTCAGTAGCCGCAATTTATATCAT
ACTTTGCCGGTATATACTCAACGTACCGACAGAGGACAGTTCGGAGTTGATAAACGAAATCAACCATTCCGAACGCATTT
TTGAAATCCAGCATACACATATGCAGCAGGCGCAGAACATCTGGAATGAGATTGACTCTCTGGACTTCAACATTCATCAG
GTACAAAAGATGGACGAGGTGAAGGATGGGATTTACCAATTGCAGCATATATACAAGGAAAACAATATGAATACGAAATT
CCTTTTCGGCGTGTTGTCCTCCAGAATGCTTAAATGCCAATTCGACATAAAAGAGGAATTGAACAGTCTGGTACATAACA
ATGCACTGATTGAACGGGATTTGGAAGAATGTAAAGCCAATTTATAA