Detailed information of component protein


Summary

Component ID T6CP011080
Component protein type TssH
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (813 a.a.); Nucleotide sequence (2439 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13500
Coordinate (Strand) 3242620..3245058 (+)
NCBI ID WP_011203024.1
RefSeq NC_006347
Uniprot ID A0A0F5JTP1_9BACT, A0A223HPI0_9BACT, Q64SE5_BACFR, A0A3E4MYQ6_9BACT, A0A076IPP6_9BACT, A0A412VNB5_9BACE, A0A414C416_9BACT, A0A412YMY5_BACFG, A0A412X802_BACUN, A0A415BNG4_PHOVU
KEGG ID bdo:EL88_14265, parc:CI960_13795, bfr:BF2835
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.2e-42 550..712
ClpB_D2-small PF10431.11 2.9e-20 720..800
AAA_lid_9 PF17871.3 5.9e-17 348..425
AAA_16 PF13191.8 1.4e-08 178..233
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-812 MNDSNYSPSLVSALKIARGMALQDKHNTFGVSHLVMAMFAENTGLKEILSSMQKDVGYIMEWFDTHREMYRSSGTSTEEVEPDEEVSKVLDESERSKIKLGADSIDSICVFTAILREGVVYSHQQIEILDVSEDDILSHYNALTPLHSYQGEEMQITASVPYADNLKKQETINAGGFVVGREKEVRTILECLERSENKGILIVGESGIGKSSIINAFVKDICENEDEMLKQISIVGLNTAKLLASTSSETEIAQKVVNLMHKLNQLEQAVLVIDDLQVLLENSVSGKASTLINILSAQISEGAANLVLTLTNDSYRKNIEKHPIEGRLDIIKIEELDTATLESAIQLHKKRIENYYELRISDACIKDSIALSKRYFKERSLPSAAIDLLDRTAAAVRLCNKNARASVSDLEADFEEIKSLDEKISEGPLYLLYRSVFSKISVVLTTKLSDNYVWDKEDDIAIKAGRLSGIIKELKALSDQSIEEIRSSEIEAIVAECTNIPIGKIQAREKDRLLSIESKLQERVKGQNRAITTLSDAIIESRSGLSDPKKPIGSFFFLGPTGTGKTELTKSLAELLFDDESAMIRFDMSEFKEEHSAALLYGAPPGYVGYEEGGLLVTQIRQKPYSVVLFDEIEKAHSSVYDVFLQMMDEGKIHDKLGREGDFSNSIIIFTSNIGSQWIVEQIQSGHTPDSGKLIEVMAQYFRPEFLGRLTEVVPFAPIDENVAKQIFNLHFGRLQEQLMKQKNIQLNLSDEALQHLANKGYSPKYGARPIAGVIRTYIKKSVSRLIVSEQIKSGDNIVINYRNGELIWEQC


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9884 - -


  Protein sequence: 813 a.a.    

>T6CP011080 NC_006347:3242620-3245058 [Bacteroides fragilis YCH46] [TssH]
MNDSNYSPSLVSALKIARGMALQDKHNTFGVSHLVMAMFAENTGLKEILSSMQKDVGYIMEWFDTHREMYRSSGTSTEEV
EPDEEVSKVLDESERSKIKLGADSIDSICVFTAILREGVVYSHQQIEILDVSEDDILSHYNALTPLHSYQGEEMQITASV
PYADNLKKQETINAGGFVVGREKEVRTILECLERSENKGILIVGESGIGKSSIINAFVKDICENEDEMLKQISIVGLNTA
KLLASTSSETEIAQKVVNLMHKLNQLEQAVLVIDDLQVLLENSVSGKASTLINILSAQISEGAANLVLTLTNDSYRKNIE
KHPIEGRLDIIKIEELDTATLESAIQLHKKRIENYYELRISDACIKDSIALSKRYFKERSLPSAAIDLLDRTAAAVRLCN
KNARASVSDLEADFEEIKSLDEKISEGPLYLLYRSVFSKISVVLTTKLSDNYVWDKEDDIAIKAGRLSGIIKELKALSDQ
SIEEIRSSEIEAIVAECTNIPIGKIQAREKDRLLSIESKLQERVKGQNRAITTLSDAIIESRSGLSDPKKPIGSFFFLGP
TGTGKTELTKSLAELLFDDESAMIRFDMSEFKEEHSAALLYGAPPGYVGYEEGGLLVTQIRQKPYSVVLFDEIEKAHSSV
YDVFLQMMDEGKIHDKLGREGDFSNSIIIFTSNIGSQWIVEQIQSGHTPDSGKLIEVMAQYFRPEFLGRLTEVVPFAPID
ENVAKQIFNLHFGRLQEQLMKQKNIQLNLSDEALQHLANKGYSPKYGARPIAGVIRTYIKKSVSRLIVSEQIKSGDNIVI
NYRNGELIWEQC*

  Nucleotide sequence: 2439 bp    

>T6CP011080 NC_006347:3242620-3245058 [Bacteroides fragilis YCH46] [TssH]
ATGAATGATAGCAATTATAGTCCAAGTTTGGTGTCTGCCCTTAAGATAGCAAGAGGAATGGCACTTCAAGACAAGCATAA
CACGTTCGGCGTGTCACATCTTGTCATGGCCATGTTTGCAGAAAACACGGGTCTAAAAGAAATTTTATCCTCGATGCAGA
AGGATGTCGGCTACATAATGGAATGGTTTGACACCCACCGCGAAATGTATAGGTCCAGTGGCACTTCCACAGAAGAAGTG
GAGCCTGACGAAGAAGTGTCAAAAGTCTTGGATGAGTCCGAACGGTCTAAAATTAAATTAGGAGCGGATTCCATAGACTC
CATCTGTGTGTTTACCGCCATATTGCGTGAAGGTGTCGTATATTCGCATCAGCAGATAGAGATACTGGATGTTTCGGAAG
ATGACATATTGTCCCACTACAATGCCCTTACCCCGTTGCATTCTTATCAAGGAGAGGAAATGCAGATAACAGCAAGCGTT
CCTTATGCCGACAACCTAAAAAAGCAAGAAACCATCAATGCCGGTGGCTTTGTCGTCGGTAGGGAAAAAGAGGTCCGTAC
TATTTTAGAATGCCTCGAACGCTCAGAGAACAAGGGCATACTGATTGTCGGTGAATCCGGTATCGGGAAGAGTTCCATCA
TCAACGCCTTTGTCAAAGATATCTGTGAGAATGAAGACGAGATGTTAAAGCAAATATCTATTGTCGGACTCAATACGGCA
AAACTGCTCGCATCAACCTCGTCTGAAACGGAGATAGCACAAAAAGTTGTCAATCTGATGCACAAGCTCAACCAATTGGA
ACAAGCTGTGCTGGTGATTGATGATTTACAGGTCCTTTTGGAGAACAGCGTATCAGGCAAAGCATCCACACTCATCAACA
TATTAAGTGCACAAATCAGCGAGGGAGCCGCAAATCTTGTTCTCACACTCACGAACGATTCTTACCGGAAGAACATCGAA
AAGCATCCGATAGAAGGGCGTCTTGATATCATAAAGATTGAAGAACTGGATACGGCTACACTTGAAAGTGCCATACAATT
ACATAAAAAAAGGATTGAAAACTATTACGAGCTGAGAATTTCAGATGCGTGTATTAAAGATTCAATCGCACTCTCCAAAC
GATATTTTAAGGAACGCAGCCTGCCATCTGCCGCCATCGACCTGCTTGACAGAACCGCTGCTGCCGTCCGGCTATGCAAT
AAGAATGCACGAGCCAGTGTTTCTGATTTGGAAGCGGATTTTGAGGAAATAAAGAGTCTCGACGAAAAAATATCTGAAGG
GCCGCTTTACTTACTATACCGTTCTGTATTCAGCAAAATCAGTGTCGTATTGACCACCAAACTGTCAGACAACTATGTAT
GGGATAAAGAAGATGACATCGCGATAAAAGCAGGACGTTTGTCGGGCATCATCAAAGAATTAAAGGCACTATCCGACCAG
TCTATTGAAGAGATACGCTCTTCGGAAATAGAGGCGATTGTAGCGGAGTGCACCAATATACCTATCGGAAAAATACAAGC
CCGCGAGAAGGACCGACTTTTGAGCATCGAGAGCAAATTGCAAGAACGGGTCAAAGGACAGAACCGGGCTATTACGACTT
TATCAGATGCCATTATAGAATCACGCAGCGGACTGAGTGACCCCAAGAAGCCTATAGGTTCATTCTTCTTCCTTGGCCCT
ACCGGAACGGGAAAAACAGAACTCACAAAATCACTGGCCGAGTTACTGTTTGATGACGAATCAGCCATGATCAGATTTGA
CATGTCCGAGTTCAAGGAAGAACATTCGGCTGCATTGCTGTATGGTGCACCTCCGGGATATGTAGGATATGAGGAAGGTG
GTTTACTGGTCACTCAAATCAGACAGAAACCTTATTCGGTAGTGTTATTCGATGAGATTGAGAAAGCCCATAGCAGCGTT
TATGATGTTTTCCTGCAAATGATGGATGAAGGCAAAATACATGATAAACTGGGCCGGGAAGGAGATTTTTCAAATTCCAT
AATCATTTTCACATCCAATATCGGAAGCCAGTGGATTGTGGAACAAATACAATCCGGACATACTCCTGATTCCGGAAAGC
TCATCGAGGTTATGGCACAGTATTTCCGACCTGAATTTTTGGGACGTCTCACCGAGGTGGTTCCGTTTGCGCCAATAGAT
GAAAATGTCGCCAAACAGATATTCAACCTCCATTTTGGAAGATTGCAAGAACAACTGATGAAACAGAAAAACATCCAGTT
GAATTTGTCGGATGAAGCATTGCAACATCTGGCAAACAAAGGGTATTCTCCCAAATACGGCGCACGTCCGATAGCAGGAG
TCATAAGAACTTATATCAAGAAGTCCGTATCTCGTCTGATTGTCTCTGAGCAAATCAAGTCGGGTGACAACATCGTCATA
AACTATCGAAACGGTGAACTGATATGGGAACAATGTTAG