Detailed information of component protein
Summary
| Component ID | T6CP011078 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (141 a.a.); Nucleotide sequence (423 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS13490 |
| Coordinate (Strand) | 3240418..3240840 (+) |
| NCBI ID | WP_004310150.1 |
| RefSeq | NC_006347 |
| Uniprot ID | S3YBM1_BACSE, A0A0F5JSW2_9BACT, A0A015Y2V4_BACFG, A0A016AT18_BACFG, A0A078RF55_PHOVU, A0A223HPK7_9BACT, A0A415ITU5_9BACE, A0A3A5P720_9BACE, A0A5M5BER7_BACOV, Q64SE7_BACFR, A0A3E4MYG9_9BACT, A0A076IT34_9BACT, A0A415GDQ6_9BACT, A0A412VND8_9BACE, A0A3R6BAR1_9BACT, A0A412TEK5_BACSE, C3QWD7_9BACE, A0A174WRV2_9BACE, S0FCI8_9BACT, D7JAF3_9BACE, D4WGR3_BACOV, D1JMG1_BACFG, A0A412X855_BACUN, A0A3E4WJJ8_PHOVU, A0A3E4MQA2_9BACT, I9STZ8_BACOV |
| KEGG ID | bfr:BF2833, bdo:EL88_14255, parc:CI960_13785 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 6e-11 | 22..124 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-140 | MTYLKMPLQLQSAVAKKLQRCSYQESIAQHIMLLILSHHGEVIGREDFGSMIWDLEFNQLVKISDWEEGVKNSLIKTIEKYEKRLRNVDVNVTLLEIEEENIDKVSHIRRKAQITVTGIMDRTNEKFSFNTSLYISPLSQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9797 | - | - |
Protein sequence: 141 a.a.
>T6CP011078 NC_006347:3240418-3240840 [Bacteroides fragilis YCH46] [TssE]
MTYLKMPLQLQSAVAKKLQRCSYQESIAQHIMLLILSHHGEVIGREDFGSMIWDLEFNQLVKISDWEEGVKNSLIKTIEK
YEKRLRNVDVNVTLLEIEEENIDKVSHIRRKAQITVTGIMDRTNEKFSFNTSLYISPLSQ*
MTYLKMPLQLQSAVAKKLQRCSYQESIAQHIMLLILSHHGEVIGREDFGSMIWDLEFNQLVKISDWEEGVKNSLIKTIEK
YEKRLRNVDVNVTLLEIEEENIDKVSHIRRKAQITVTGIMDRTNEKFSFNTSLYISPLSQ*
Nucleotide sequence: 423 bp
>T6CP011078 NC_006347:3240418-3240840 [Bacteroides fragilis YCH46] [TssE]
ATGACTTACCTGAAAATGCCATTACAATTGCAATCGGCTGTTGCCAAGAAATTGCAAAGGTGTTCCTATCAGGAATCGAT
AGCCCAACACATCATGCTACTGATTCTTTCTCACCATGGGGAAGTTATCGGCCGAGAAGACTTTGGTTCCATGATATGGG
ACCTTGAGTTCAACCAACTTGTGAAAATCAGCGATTGGGAGGAAGGAGTAAAAAACTCCTTAATAAAAACGATAGAGAAA
TATGAAAAGAGACTACGGAATGTAGATGTGAACGTCACCCTTTTGGAAATAGAAGAAGAAAATATAGATAAAGTATCTCA
TATCCGAAGAAAGGCACAAATAACGGTGACCGGAATAATGGATAGAACCAACGAGAAATTCAGTTTTAACACCTCATTAT
ATATAAGCCCTTTATCACAATAA
ATGACTTACCTGAAAATGCCATTACAATTGCAATCGGCTGTTGCCAAGAAATTGCAAAGGTGTTCCTATCAGGAATCGAT
AGCCCAACACATCATGCTACTGATTCTTTCTCACCATGGGGAAGTTATCGGCCGAGAAGACTTTGGTTCCATGATATGGG
ACCTTGAGTTCAACCAACTTGTGAAAATCAGCGATTGGGAGGAAGGAGTAAAAAACTCCTTAATAAAAACGATAGAGAAA
TATGAAAAGAGACTACGGAATGTAGATGTGAACGTCACCCTTTTGGAAATAGAAGAAGAAAATATAGATAAAGTATCTCA
TATCCGAAGAAAGGCACAAATAACGGTGACCGGAATAATGGATAGAACCAACGAGAAATTCAGTTTTAACACCTCATTAT
ATATAAGCCCTTTATCACAATAA