Detailed information of component protein


Summary

Component ID T6CP011086
Component protein type TssP
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (314 a.a.); Nucleotide sequence (942 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13530
Coordinate (Strand) 3248994..3249935 (+)
NCBI ID WP_004310142.1
RefSeq NC_006347
Uniprot ID A0A0F5JSF1_9BACT, A0A015XBD4_BACFG, A0A223HPH9_9BACT, A0A415IU83_9BACE, A0A3A5P983_9BACE, A0A6G0CBK6_BACOV, Q64SD9_BACFR, A0A3R6IRB5_9BACT, A0A415HZR2_9BACE, A0A414PPL4_BACSE, A0A415SM32_9BACE, D4WGQ5_BACOV, D4VMV3_9BACE, A0A5C6KZ12_BACFG, A0A3E4WJJ2_PHOVU, I9F1I3_9BACE, I9QSE2_9BACT, I9STF3_BACOV, I9SPS4_9BACE, K5Z4X5_9BACT
KEGG ID bfr:BF2841, parc:CI960_13825
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MDNKKT
Transmembrane helix 7-26 ITIIILGLVAMAGILLFLFL
Outside 27-313 PSKSHLANIDFYVYDTNDNFHYEVNERLELLVNDTAAIKGKRLIWEMGNGDTLMRNTDVSYTYRKAGKYLITLKIDGKHSVNKYIKVISGLEHEAIDSIPRINGVSEGYQGEELVFSAEGYGMDTWLWEFGESGTVDAYEQQVVYSYDIPGEYTISLQTNTTKYPVKHRITILPRFEKAEELVTVDSLVLVQNDIKKHLQAIADAKVSQKSVYYEHTNYIRNKYFCIDADQVVVVINDEKYNDFNGYCQGLHFLESNRKKRVSIDDVKIDDLNCVKSIHVTQSYIEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9446 - -


  Protein sequence: 314 a.a.    

>T6CP011086 NC_006347:3248994-3249935 [Bacteroides fragilis YCH46] [TssP]
MDNKKTITIIILGLVAMAGILLFLFLPSKSHLANIDFYVYDTNDNFHYEVNERLELLVNDTAAIKGKRLIWEMGNGDTLM
RNTDVSYTYRKAGKYLITLKIDGKHSVNKYIKVISGLEHEAIDSIPRINGVSEGYQGEELVFSAEGYGMDTWLWEFGESG
TVDAYEQQVVYSYDIPGEYTISLQTNTTKYPVKHRITILPRFEKAEELVTVDSLVLVQNDIKKHLQAIADAKVSQKSVYY
EHTNYIRNKYFCIDADQVVVVINDEKYNDFNGYCQGLHFLESNRKKRVSIDDVKIDDLNCVKSIHVTQSYIEK*

  Nucleotide sequence: 942 bp    

>T6CP011086 NC_006347:3248994-3249935 [Bacteroides fragilis YCH46] [TssP]
ATGGATAATAAGAAAACTATAACAATCATCATATTGGGACTGGTTGCCATGGCAGGTATCCTTTTGTTTTTGTTCCTGCC
TTCGAAGTCGCACCTTGCCAATATTGACTTTTATGTGTATGACACCAATGATAATTTTCATTATGAGGTCAATGAGCGGT
TGGAGCTATTAGTCAACGATACGGCAGCGATTAAAGGCAAGCGGCTCATTTGGGAAATGGGAAACGGTGATACACTGATG
AGAAATACGGATGTGTCATACACTTACCGTAAGGCCGGCAAATATCTTATTACTTTGAAAATAGACGGAAAACACTCCGT
AAACAAGTATATCAAAGTTATCTCAGGGCTGGAGCATGAGGCCATTGATTCCATACCCCGTATAAATGGAGTGTCAGAGG
GTTATCAAGGTGAAGAGCTGGTCTTTTCGGCAGAAGGCTATGGTATGGACACATGGCTATGGGAATTTGGAGAAAGCGGT
ACTGTGGACGCATACGAGCAGCAAGTCGTGTATTCGTATGATATTCCGGGAGAATACACCATCTCATTACAAACCAATAC
GACGAAATATCCGGTGAAGCACCGTATAACCATTCTCCCACGCTTTGAAAAAGCAGAGGAACTGGTCACGGTGGATTCGT
TGGTACTGGTACAGAATGATATAAAAAAACACCTGCAAGCCATAGCTGACGCCAAAGTCTCACAAAAGTCGGTCTATTAC
GAACATACGAATTATATCCGTAACAAATATTTTTGCATTGATGCAGACCAGGTAGTGGTCGTCATCAATGATGAAAAATA
CAATGACTTCAACGGCTATTGCCAAGGACTGCATTTTCTTGAAAGCAACAGGAAAAAGCGTGTGAGTATTGATGATGTTA
AAATTGACGATTTGAATTGCGTCAAGTCCATCCATGTGACACAAAGTTATATTGAAAAATGA