Detailed information of component protein


Summary

Component ID T6CP011081
Component protein type TssG
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (312 a.a.); Nucleotide sequence (936 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13505
Coordinate (Strand) 3245043..3245978 (+)
NCBI ID WP_005777320.1
RefSeq NC_006347
Uniprot ID A0A0F5JSE7_9BACT, A0A223HPH2_9BACT, A0A415ITW9_9BACE, A0A3A5P776_9BACE, A0A6G0CC53_BACOV, Q64SE4_BACFR, A0A3E4MZ58_9BACT, A0A076IR54_9BACT, A0A3R6FE01_9BACT, A0A412VNE3_9BACE, A0A414C3W8_9BACT, A0A414PPL0_BACSE, A0A412YN92_BACFG, A0A412X7Y0_BACUN, A0A3E4WJJ3_PHOVU, A0A3E4MPK1_9BACT
KEGG ID bfr:BF2836, parc:CI960_13800, bdo:EL88_14270
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-311 MGTMLAQKKPLESIQRSQAINFVAEIFYDELQFILDRRLLDHTMVNCHGMNSRVKSRDVLSVSVQHIAATNADKEYILLNLARNSIYHQLPELLFHPLVLSTPGMSNKEIVEAIRANEKQDKELIQFFAPFDTEFFKEKVRINNRHLNFFSDPDSKKNFIKMIEVMENVELSITSHQKYKLFLFLCNAERYKENLPAIEQLLLIVLGLKVKLRLEVHEIDETVYLSVGSGCVGQTLGLNGLMISETDDLTATIILDTPTDDYEEVKTHLSNVRRILEFFILSTRNIEVDYLVRGETDFILGENRLGYNMNL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9798 - -


  Protein sequence: 312 a.a.    

>T6CP011081 NC_006347:3245043-3245978 [Bacteroides fragilis YCH46] [TssG]
MGTMLAQKKPLESIQRSQAINFVAEIFYDELQFILDRRLLDHTMVNCHGMNSRVKSRDVLSVSVQHIAATNADKEYILLN
LARNSIYHQLPELLFHPLVLSTPGMSNKEIVEAIRANEKQDKELIQFFAPFDTEFFKEKVRINNRHLNFFSDPDSKKNFI
KMIEVMENVELSITSHQKYKLFLFLCNAERYKENLPAIEQLLLIVLGLKVKLRLEVHEIDETVYLSVGSGCVGQTLGLNG
LMISETDDLTATIILDTPTDDYEEVKTHLSNVRRILEFFILSTRNIEVDYLVRGETDFILGENRLGYNMNL*

  Nucleotide sequence: 936 bp    

>T6CP011081 NC_006347:3245043-3245978 [Bacteroides fragilis YCH46] [TssG]
ATGGGAACAATGTTAGCGCAAAAGAAACCCTTGGAAAGCATCCAACGAAGTCAGGCAATAAATTTTGTCGCAGAAATCTT
TTATGATGAACTTCAATTTATTCTTGACCGGCGGCTGTTGGACCATACTATGGTTAATTGCCATGGTATGAACAGTCGTG
TGAAATCCAGAGATGTATTAAGTGTTTCGGTACAGCATATCGCGGCGACAAATGCCGACAAAGAATATATATTGCTGAAT
CTGGCAAGAAACAGCATCTATCATCAATTGCCGGAATTACTATTTCATCCATTGGTGCTTAGCACACCGGGCATGAGCAA
CAAGGAGATAGTTGAAGCCATCCGAGCCAATGAAAAACAGGATAAAGAGCTTATACAATTCTTTGCACCCTTTGATACAG
AGTTTTTCAAAGAAAAGGTCCGTATCAATAACCGCCATCTGAATTTCTTTTCAGACCCGGACTCCAAGAAGAACTTCATC
AAGATGATTGAAGTAATGGAAAATGTCGAACTATCCATTACTTCCCATCAGAAATATAAGCTGTTCCTATTCCTCTGCAA
TGCAGAACGGTATAAAGAGAACCTGCCTGCTATCGAGCAACTGCTTCTTATCGTTTTGGGATTGAAGGTGAAACTGCGAC
TGGAAGTCCATGAGATTGATGAAACGGTTTACCTTTCCGTCGGTTCCGGATGTGTCGGACAGACATTAGGCCTTAATGGT
CTAATGATAAGCGAAACCGATGATTTGACGGCGACAATCATCCTTGATACTCCGACAGATGACTATGAGGAGGTAAAAAC
GCATCTATCCAATGTCCGCCGGATACTTGAATTTTTCATCCTTTCAACAAGAAATATCGAAGTTGATTATCTGGTACGTG
GAGAAACGGATTTTATACTCGGAGAAAACCGATTAGGATATAATATGAACTTATGA