Detailed information of component protein


Summary

Component ID T6CP011076
Component protein type TssC
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (460 a.a.); Nucleotide sequence (1380 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13480
Coordinate (Strand) 3238391..3239770 (-)
NCBI ID WP_004310152.1
RefSeq NC_006347
Uniprot ID S3Y2M8_BACSE, A0A0F5JSE3_9BACT, A0A015XBC3_BACFG, A0A078RAT3_PHOVU, A0A223HPG8_9BACT, A0A415IU94_9BACE, A0A3A5P995_9BACE, A0A5M5BE70_BACOV, Q64SE9_BACFR, A0A3E4MYJ9_9BACT, A0A076IR49_9BACT, A0A3R6FC54_9BACT, A0A415HZQ3_9BACE, A0A3R6BLP2_9BACT, A0A412TF11_BACSE, C3QWD9_9BACE, A0A174WUP5_9BACE, S0FDG6_9BACT, D7JAF1_9BACE, D4WGR5_BACOV, D4VMW3_9BACE, D1JMG3_BACFG, A0A414BCN1_BACUN, A0A3E4WJK3_PHOVU, A0A3E4MQU1_9BACT
KEGG ID parc:CI960_13775, bfr:BF2831, bdo:EL88_14245
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssC PF17541.4 4.9e-224 29..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-459 MKQETQQQTASTTTSQKVVSQQAQKSSASAIDKLKEFGGFAFLENIIDGYSNLNPARKARRNIFLTDEQWENERKALVNRLSVWLKLLRENDTAEQMRDKAKETAENAENLLNHNLKNALARTRELESAYRTIAFFYKNTESDKVKNVTIVNATMEQLQDLDNTIFADHISNELKQNFDRLDLRRNYSLLVVPGYIGSNAILDKWSKMAYENKVFLVTDFQDLETPDDVVDIFFNANHTSGDVFKSNTIMTCNWLLGRQREESVGEEENLYIPPSSSLAGKIYNTLMSQVVAGKKFGGLNEVESVRFDLRKSEISELERMGLVPMVNEYSKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLIDFLNRRAFENWTTRTEADLRGQVVKFLDSVMGPNKLIERFKVMKIEQDPNQKDRVLLDIHITPYFPAKSFVIQLAGHKGDNPEDAIWESEYHQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9699 - -


  Protein sequence: 460 a.a.    

>T6CP011076 NC_006347:c3239770-3238391 [Bacteroides fragilis YCH46] [TssC]
MKQETQQQTASTTTSQKVVSQQAQKSSASAIDKLKEFGGFAFLENIIDGYSNLNPARKARRNIFLTDEQWENERKALVNR
LSVWLKLLRENDTAEQMRDKAKETAENAENLLNHNLKNALARTRELESAYRTIAFFYKNTESDKVKNVTIVNATMEQLQD
LDNTIFADHISNELKQNFDRLDLRRNYSLLVVPGYIGSNAILDKWSKMAYENKVFLVTDFQDLETPDDVVDIFFNANHTS
GDVFKSNTIMTCNWLLGRQREESVGEEENLYIPPSSSLAGKIYNTLMSQVVAGKKFGGLNEVESVRFDLRKSEISELERM
GLVPMVNEYSKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLIDFLNRRAFENWTTRTEADLRGQVVKFLDSVMGPNK
LIERFKVMKIEQDPNQKDRVLLDIHITPYFPAKSFVIQLAGHKGDNPEDAIWESEYHQE*

  Nucleotide sequence: 1380 bp    

>T6CP011076 NC_006347:c3239770-3238391 [Bacteroides fragilis YCH46] [TssC]
ATGAAGCAGGAAACTCAACAACAGACAGCCAGTACGACAACCTCACAGAAAGTCGTATCACAACAGGCGCAAAAGTCATC
TGCATCGGCAATAGACAAACTCAAAGAATTTGGTGGCTTCGCTTTTCTTGAAAATATCATAGATGGGTATTCCAATCTTA
ATCCGGCACGAAAGGCCCGTCGCAACATCTTCCTCACGGATGAACAGTGGGAAAATGAACGTAAGGCCTTGGTTAATCGC
TTAAGCGTATGGCTCAAACTCTTACGTGAGAATGACACTGCCGAACAAATGCGGGACAAGGCCAAAGAAACCGCAGAAAA
CGCCGAGAACCTTCTTAATCATAACTTGAAGAATGCTCTTGCCAGGACACGGGAACTTGAAAGCGCATATCGCACTATTG
CGTTCTTTTACAAGAACACGGAAAGTGATAAGGTGAAGAATGTCACCATTGTCAATGCGACCATGGAGCAGCTTCAGGAT
TTGGACAATACCATTTTCGCTGACCACATTAGCAACGAACTCAAACAGAATTTTGACCGTCTTGACCTGCGTCGCAACTA
CTCCTTGCTTGTCGTTCCTGGGTATATAGGCTCAAATGCCATTTTGGATAAGTGGTCTAAAATGGCATACGAGAACAAGG
TTTTTCTTGTTACAGACTTCCAAGACCTTGAAACTCCGGACGATGTAGTAGATATATTCTTCAATGCCAATCATACGAGT
GGAGATGTGTTCAAATCGAATACTATTATGACCTGTAACTGGTTGCTTGGTCGTCAAAGAGAGGAAAGCGTTGGAGAAGA
AGAAAATCTTTATATTCCGCCATCTTCTTCACTTGCCGGAAAAATATACAACACCTTAATGTCTCAGGTAGTAGCCGGAA
AGAAATTTGGTGGACTTAATGAAGTAGAAAGTGTACGCTTCGACCTTCGCAAGAGCGAGATTTCAGAGCTTGAACGTATG
GGGCTTGTGCCGATGGTGAACGAGTACAGCAAGGTTATGGCTTTCTCCGCCAAGACATTATTTAATGGAGATAATCTTGG
CTTGCAGACCTACTCCGTAGTTCGTGTATTCGACTATATAACGAAGGTACTGATTGACTTCCTGAACCGTCGGGCATTTG
AAAATTGGACTACTCGCACGGAAGCAGATTTGCGTGGTCAGGTTGTGAAATTCCTCGATAGTGTAATGGGACCGAACAAA
CTCATCGAACGCTTCAAGGTTATGAAGATTGAACAAGACCCGAATCAGAAAGACCGTGTGCTTCTTGACATCCACATCAC
ACCGTATTTCCCGGCAAAAAGCTTCGTGATACAGCTTGCCGGTCATAAAGGCGATAATCCGGAGGATGCTATTTGGGAAA
GCGAATATCATCAAGAATAG