Detailed information of component protein
Summary
| Component ID | T6CP011087 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (132 a.a.); Nucleotide sequence (396 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS13545 |
| Coordinate (Strand) | 3253604..3253999 (+) |
| NCBI ID | WP_004310139.1 |
| RefSeq | NC_006347 |
| Uniprot ID | G6AWS2_9BACT, A0A0F5JSB6_9BACT, A0A078RD76_PHOVU, A0A223HPM2_9BACT, A0A415ITZ6_9BACE, A0A3A5PEU3_9BACE, A0A5M5BG45_BACOV, Q64SD6_BACFR, A0A3E4MZQ5_9BACT, A0A076IVQ2_9BACT, A0A3R6J9F0_9BACT, A0A415HZR1_9BACE, A0A414C3X2_9BACT, A0A414PPM5_BACSE, C3QWC6_9BACE, A0A174WQ14_9BACE, S0FD12_9BACT, D7JAG4_9BACE, D4WGQ2_BACOV, D4VMV0_9BACE, D1JMF0_BACFG, A0A414BCP4_BACUN, A0A3E4WK31_PHOVU, A0A3E4MPH1_9BACT, I9QBK0_9BACE, I8W126_9BACT, I9HHS8_BACOV, I9SNZ7_9BACE, K5YTP8_9BACT |
| KEGG ID | bdo:EL88_14310, parc:CI960_13840, bfr:BF2844 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 7.8e-42 | 1..129 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-131 | MAFRASLELNNKEFDVLYSNYEFSRNTDPKGMPSSSVLGGRVKATIESTEDTSVIEAMLNSPFKPVEGKIIYKKTEEDAKMKEIQFKNAYIVHYSETLDANNDVPMTITITFSAEEIIVGSAALDNRWPKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9904 | - | - |
Protein sequence: 132 a.a.
>T6CP011087 NC_006347:3253604-3253999 [Bacteroides fragilis YCH46] [TssD]
MAFRASLELNNKEFDVLYSNYEFSRNTDPKGMPSSSVLGGRVKATIESTEDTSVIEAMLNSPFKPVEGKIIYKKTEEDAK
MKEIQFKNAYIVHYSETLDANNDVPMTITITFSAEEIIVGSAALDNRWPKK*
MAFRASLELNNKEFDVLYSNYEFSRNTDPKGMPSSSVLGGRVKATIESTEDTSVIEAMLNSPFKPVEGKIIYKKTEEDAK
MKEIQFKNAYIVHYSETLDANNDVPMTITITFSAEEIIVGSAALDNRWPKK*
Nucleotide sequence: 396 bp
>T6CP011087 NC_006347:3253604-3253999 [Bacteroides fragilis YCH46] [TssD]
ATGGCATTTAGAGCATCATTGGAACTTAACAACAAGGAATTTGACGTCCTTTATTCAAACTATGAGTTTAGTCGTAACAC
AGACCCTAAAGGTATGCCCTCTTCAAGCGTATTGGGTGGTAGAGTAAAAGCAACCATCGAATCAACAGAAGACACTTCTG
TCATCGAAGCGATGTTGAACAGTCCTTTCAAACCTGTAGAAGGAAAGATTATCTACAAAAAAACGGAGGAAGATGCCAAG
ATGAAGGAGATTCAGTTCAAGAACGCATACATCGTTCACTACTCGGAAACTCTGGACGCGAACAACGATGTGCCTATGAC
AATCACCATTACGTTCTCCGCTGAAGAAATCATCGTCGGCAGCGCAGCTCTTGACAACCGTTGGCCGAAGAAATAA
ATGGCATTTAGAGCATCATTGGAACTTAACAACAAGGAATTTGACGTCCTTTATTCAAACTATGAGTTTAGTCGTAACAC
AGACCCTAAAGGTATGCCCTCTTCAAGCGTATTGGGTGGTAGAGTAAAAGCAACCATCGAATCAACAGAAGACACTTCTG
TCATCGAAGCGATGTTGAACAGTCCTTTCAAACCTGTAGAAGGAAAGATTATCTACAAAAAAACGGAGGAAGATGCCAAG
ATGAAGGAGATTCAGTTCAAGAACGCATACATCGTTCACTACTCGGAAACTCTGGACGCGAACAACGATGTGCCTATGAC
AATCACCATTACGTTCTCCGCTGAAGAAATCATCGTCGGCAGCGCAGCTCTTGACAACCGTTGGCCGAAGAAATAA