Detailed information of component protein


Summary

Component ID T6CP011087
Component protein type TssD
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (132 a.a.); Nucleotide sequence (396 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BF_RS13545
Coordinate (Strand) 3253604..3253999 (+)
NCBI ID WP_004310139.1
RefSeq NC_006347
Uniprot ID G6AWS2_9BACT, A0A0F5JSB6_9BACT, A0A078RD76_PHOVU, A0A223HPM2_9BACT, A0A415ITZ6_9BACE, A0A3A5PEU3_9BACE, A0A5M5BG45_BACOV, Q64SD6_BACFR, A0A3E4MZQ5_9BACT, A0A076IVQ2_9BACT, A0A3R6J9F0_9BACT, A0A415HZR1_9BACE, A0A414C3X2_9BACT, A0A414PPM5_BACSE, C3QWC6_9BACE, A0A174WQ14_9BACE, S0FD12_9BACT, D7JAG4_9BACE, D4WGQ2_BACOV, D4VMV0_9BACE, D1JMF0_BACFG, A0A414BCP4_BACUN, A0A3E4WK31_PHOVU, A0A3E4MPH1_9BACT, I9QBK0_9BACE, I8W126_9BACT, I9HHS8_BACOV, I9SNZ7_9BACE, K5YTP8_9BACT
KEGG ID bdo:EL88_14310, parc:CI960_13840, bfr:BF2844
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssD PF17642.3 7.8e-42 1..129

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-131 MAFRASLELNNKEFDVLYSNYEFSRNTDPKGMPSSSVLGGRVKATIESTEDTSVIEAMLNSPFKPVEGKIIYKKTEEDAKMKEIQFKNAYIVHYSETLDANNDVPMTITITFSAEEIIVGSAALDNRWPKK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -



  Protein sequence: 132 a.a.    

>T6CP011087 NC_006347:3253604-3253999 [Bacteroides fragilis YCH46] [TssD]
MAFRASLELNNKEFDVLYSNYEFSRNTDPKGMPSSSVLGGRVKATIESTEDTSVIEAMLNSPFKPVEGKIIYKKTEEDAK
MKEIQFKNAYIVHYSETLDANNDVPMTITITFSAEEIIVGSAALDNRWPKK*

  Nucleotide sequence: 396 bp    

>T6CP011087 NC_006347:3253604-3253999 [Bacteroides fragilis YCH46] [TssD]
ATGGCATTTAGAGCATCATTGGAACTTAACAACAAGGAATTTGACGTCCTTTATTCAAACTATGAGTTTAGTCGTAACAC
AGACCCTAAAGGTATGCCCTCTTCAAGCGTATTGGGTGGTAGAGTAAAAGCAACCATCGAATCAACAGAAGACACTTCTG
TCATCGAAGCGATGTTGAACAGTCCTTTCAAACCTGTAGAAGGAAAGATTATCTACAAAAAAACGGAGGAAGATGCCAAG
ATGAAGGAGATTCAGTTCAAGAACGCATACATCGTTCACTACTCGGAAACTCTGGACGCGAACAACGATGTGCCTATGAC
AATCACCATTACGTTCTCCGCTGAAGAAATCATCGTCGGCAGCGCAGCTCTTGACAACCGTTGGCCGAAGAAATAA