Detailed information of component protein


Summary

Component ID T6CP011088
Component protein type TssI
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13550
Coordinate (Strand) 3254110..3255873 (+)
NCBI ID WP_005777303.1
RefSeq NC_006347
Uniprot ID A0A0F5JTQ1_9BACT, A0A223HPJ1_9BACT, Q64SD5_BACFR, A0A7D4K4B0_BACFG
KEGG ID bfr:BF2845, parc:CI960_13845
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_base_V PF04717.14 7.3e-21 359..438
Phage_GPD PF05954.13 1.1e-17 69..325
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MLEQKKVTLEIAGIPMPSFVQLMLKQSINEHHYFEITLDIQAIEAYGVEIPEASKDWVGKKVIMDFGGTIFVGVATMVGLHRSGGTHGNIKVTGYSSTFLLESDHTCASWCNKSLSDIVKELTDKAGVQALVNPETKSKLEYECQYEETNFRFIQRLARQYQEWLYYDGQNLVFGKPQAGSTTKLTYGEELSVLDVCSQALARPIKGSSYHSVNDQTYNGQSPDTAAGQNTLGQAAFDSSLALFTAPAVQRAEPRITNKGELDAYFQRRQQSDSAASSFITGESDCRILTVGSIIDVHTAIHTGIGIHVKNSIGTYIITEITHVAGMGDSYQNYFTALPSSIPTLPCPDVPLPVAHTQQAVVVSNEDPKKLGRVQVKMNWQTGPMQTSWIRVLTPDAGTSDKVATNRGFVFIPEKGDQVMVAFRYDDPNRPFVLGSLFHGKSGTGGGSSNKTKSLTTRSGCTITLDDEKGSVMMKDKEGNSYTADGEGNITISASKSITLCVGENKIMIDSEGNISSNAEKDITESAGANIAQSAENIDCTASSNYNISSTDFTATGSSSATVSGTTKATIDSSGTTAVAGTIVKLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9930 - -


  Protein sequence: 588 a.a.    

>T6CP011088 NC_006347:3254110-3255873 [Bacteroides fragilis YCH46] [TssI]
MLEQKKVTLEIAGIPMPSFVQLMLKQSINEHHYFEITLDIQAIEAYGVEIPEASKDWVGKKVIMDFGGTIFVGVATMVGL
HRSGGTHGNIKVTGYSSTFLLESDHTCASWCNKSLSDIVKELTDKAGVQALVNPETKSKLEYECQYEETNFRFIQRLARQ
YQEWLYYDGQNLVFGKPQAGSTTKLTYGEELSVLDVCSQALARPIKGSSYHSVNDQTYNGQSPDTAAGQNTLGQAAFDSS
LALFTAPAVQRAEPRITNKGELDAYFQRRQQSDSAASSFITGESDCRILTVGSIIDVHTAIHTGIGIHVKNSIGTYIITE
ITHVAGMGDSYQNYFTALPSSIPTLPCPDVPLPVAHTQQAVVVSNEDPKKLGRVQVKMNWQTGPMQTSWIRVLTPDAGTS
DKVATNRGFVFIPEKGDQVMVAFRYDDPNRPFVLGSLFHGKSGTGGGSSNKTKSLTTRSGCTITLDDEKGSVMMKDKEGN
SYTADGEGNITISASKSITLCVGENKIMIDSEGNISSNAEKDITESAGANIAQSAENIDCTASSNYNISSTDFTATGSSS
ATVSGTTKATIDSSGTTAVAGTIVKLN*

  Nucleotide sequence: 1764 bp    

>T6CP011088 NC_006347:3254110-3255873 [Bacteroides fragilis YCH46] [TssI]
ATGCTGGAACAAAAAAAAGTCACATTGGAAATAGCCGGCATACCCATGCCGTCGTTTGTGCAGTTGATGCTCAAACAGAG
CATCAATGAGCATCACTACTTTGAGATAACGCTGGATATCCAAGCCATAGAAGCCTATGGTGTGGAAATCCCGGAGGCGT
CAAAAGACTGGGTTGGGAAAAAAGTAATCATGGACTTCGGCGGCACTATTTTTGTCGGCGTGGCCACCATGGTGGGACTT
CATCGTTCCGGTGGAACACACGGAAATATAAAAGTGACGGGATATTCGTCAACATTCCTACTGGAGTCAGACCACACTTG
TGCCTCATGGTGCAACAAATCCTTGTCTGACATCGTTAAGGAACTTACAGACAAGGCAGGAGTGCAAGCTCTTGTCAATC
CGGAAACGAAATCGAAGCTGGAATACGAATGCCAGTACGAGGAAACCAACTTCAGATTCATACAACGGCTTGCCCGCCAA
TATCAGGAATGGCTCTACTACGACGGACAGAACCTTGTATTCGGGAAGCCACAGGCCGGCTCGACGACCAAGCTGACATA
CGGCGAGGAACTATCCGTGCTCGATGTCTGCTCGCAGGCACTTGCCCGACCAATAAAGGGAAGTTCTTACCATTCGGTGA
ACGACCAGACCTATAATGGCCAATCCCCCGATACCGCAGCCGGACAAAACACATTAGGACAAGCGGCCTTTGACTCGTCA
TTGGCTTTGTTTACCGCTCCCGCTGTCCAACGGGCGGAACCGCGCATAACCAATAAGGGTGAACTTGACGCCTATTTCCA
ACGCAGGCAGCAAAGCGACAGCGCCGCATCCAGTTTCATCACCGGGGAAAGCGATTGCCGCATCCTTACGGTGGGCAGTA
TCATAGATGTTCATACCGCTATCCATACAGGAATAGGTATCCACGTAAAAAATAGCATCGGCACCTATATCATTACGGAA
ATAACCCACGTAGCCGGTATGGGTGACAGTTACCAGAACTATTTCACCGCACTTCCGTCCTCTATTCCCACCCTTCCATG
CCCGGATGTACCTCTGCCTGTCGCTCATACACAGCAGGCCGTGGTTGTCAGCAACGAGGACCCGAAAAAGTTAGGCCGCG
TCCAAGTCAAGATGAACTGGCAGACCGGTCCGATGCAAACCTCGTGGATACGGGTACTCACTCCTGACGCAGGTACAAGC
GACAAAGTGGCCACAAACAGAGGATTTGTATTCATACCCGAAAAGGGAGACCAAGTCATGGTGGCATTCAGATATGATGA
CCCGAACCGTCCGTTTGTACTTGGCAGCTTATTCCATGGAAAGTCAGGCACCGGTGGCGGCAGTTCAAACAAAACAAAAA
GCCTGACTACCCGCAGCGGTTGTACCATAACGCTTGATGATGAAAAAGGAAGCGTTATGATGAAAGACAAGGAAGGCAAC
AGCTATACGGCAGACGGAGAAGGAAATATCACAATATCTGCCTCTAAAAGCATCACCTTGTGTGTTGGAGAAAACAAAAT
AATGATTGATAGCGAAGGCAATATATCATCTAATGCGGAAAAGGACATAACAGAGTCCGCGGGTGCCAATATTGCGCAAT
CAGCAGAAAATATTGATTGTACAGCAAGCAGCAATTATAATATCTCCAGTACTGATTTTACAGCAACCGGCAGCAGCAGT
GCCACGGTCAGCGGTACAACAAAGGCTACGATAGATTCTTCCGGAACCACAGCCGTAGCCGGAACTATTGTCAAATTGAA
TTAA