Detailed information of component protein


Summary

Component ID T6CP011082
Component protein type TssN
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (293 a.a.); Nucleotide sequence (879 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13510
Coordinate (Strand) 3245992..3246870 (+)
NCBI ID WP_004322089.1
RefSeq NC_006347
Uniprot ID A0A0F5JST6_9BACT, A0A015WC18_BACFG, A0A223HPH7_9BACT, A0A415ITU9_9BACE, A0A3A5PI32_9BACE, Q64SE3_BACFR, A0A3E4MYW8_9BACT, A0A076IUG2_9BACT, A0A415GHA5_9BACT, A0A415HZQ7_9BACE, A0A414C3X3_9BACT, A0A414PPK7_BACSE, A0A174WHC9_9BACE, D7JAF7_9BACE, D1JMF7_BACFG, A0A412X780_BACUN, A0A3E4WJU1_PHOVU, A0A3E4MPI7_9BACT, I8YB17_BACOV
KEGG ID bdo:EL88_14275, parc:CI960_13805, bfr:BF2837
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssN PF17555.4 1e-68 8..285
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MKILLY
Transmembrane helix 7-26 FFARYLLAPLFVAVMIFVLT
Outside 27-40 GIKTIKSKLSLKKL
Transmembrane helix 41-60 IIFILLASIAVALPSLFGFL
Inside 61-64 KNEY
Transmembrane helix 65-84 VWGGLTFTILSYILLGALFC
Outside 85-103 KLSTSDLFGAIGIGSSRTA
Transmembrane helix 104-126 VILTLTTICALGGWCYYLLFELI
Inside 127-130 SKLP
Transmembrane helix 131-150 YSLWNTTNILWFAIPYLIMY
Outside 151-292 SRTLFLDIPHPIYTPWELSYGTFDRKYWDNIDNFGFRTVKVKIKRNIKDPTYASLVVRLPNEISLGNWFNWVIEDQNRRFPQNKIETEKEDMQIGWMFYTSKWFNFPLFIRILDPTLTSEGNKIKNNQTIYIRRVQVETKTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9878 - -


  Protein sequence: 293 a.a.    

>T6CP011082 NC_006347:3245992-3246870 [Bacteroides fragilis YCH46] [TssN]
MKILLYFFARYLLAPLFVAVMIFVLTGIKTIKSKLSLKKLIIFILLASIAVALPSLFGFLKNEYVWGGLTFTILSYILLG
ALFCKLSTSDLFGAIGIGSSRTAVILTLTTICALGGWCYYLLFELISKLPYSLWNTTNILWFAIPYLIMYSRTLFLDIPH
PIYTPWELSYGTFDRKYWDNIDNFGFRTVKVKIKRNIKDPTYASLVVRLPNEISLGNWFNWVIEDQNRRFPQNKIETEKE
DMQIGWMFYTSKWFNFPLFIRILDPTLTSEGNKIKNNQTIYIRRVQVETKTS*

  Nucleotide sequence: 879 bp    

>T6CP011082 NC_006347:3245992-3246870 [Bacteroides fragilis YCH46] [TssN]
ATGAAGATATTGCTATATTTCTTTGCACGTTATTTATTGGCTCCATTATTTGTAGCCGTGATGATATTTGTCTTGACCGG
AATAAAAACGATCAAGAGCAAACTTAGCCTGAAGAAATTAATCATATTCATTCTTCTGGCTTCCATTGCCGTTGCTTTAC
CCAGCCTGTTCGGTTTCCTAAAAAACGAATACGTCTGGGGAGGCTTGACATTCACGATATTGTCCTATATCCTCCTTGGA
GCATTGTTCTGCAAACTGTCAACCTCCGATTTGTTCGGAGCAATCGGTATTGGCAGTTCCCGAACAGCGGTCATTCTCAC
TCTAACCACAATATGCGCTTTAGGCGGATGGTGCTACTATCTACTGTTTGAACTGATAAGCAAGCTACCTTATTCGCTAT
GGAACACAACAAATATCCTGTGGTTTGCAATCCCATATCTGATTATGTACAGCAGAACCCTGTTCCTGGACATCCCGCAC
CCGATATATACCCCATGGGAATTGAGCTATGGTACCTTTGACCGGAAATATTGGGACAACATAGACAACTTCGGCTTCCG
AACGGTCAAAGTCAAAATCAAACGGAATATAAAAGACCCGACATACGCTTCGTTGGTTGTCCGCCTGCCCAATGAAATAT
CTCTTGGGAATTGGTTCAATTGGGTTATCGAAGACCAAAACAGGCGTTTCCCCCAAAACAAGATTGAAACAGAGAAGGAA
GATATGCAAATCGGATGGATGTTCTATACCTCAAAATGGTTTAACTTCCCGTTGTTCATAAGAATACTTGACCCCACTCT
GACGAGTGAGGGCAATAAGATTAAGAATAATCAAACGATATATATCCGACGTGTACAAGTAGAAACAAAAACATCATAA