Detailed information of component protein
Summary
| Component ID | T6CP011082 |
| Component protein type | TssN |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (293 a.a.); Nucleotide sequence (879 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 3245992..3246870 (+) |
| NCBI ID | WP_004322089.1 |
| RefSeq | NC_006347 |
| Uniprot ID | A0A0F5JST6_9BACT, A0A015WC18_BACFG, A0A223HPH7_9BACT, A0A415ITU9_9BACE, A0A3A5PI32_9BACE, Q64SE3_BACFR, A0A3E4MYW8_9BACT, A0A076IUG2_9BACT, A0A415GHA5_9BACT, A0A415HZQ7_9BACE, A0A414C3X3_9BACT, A0A414PPK7_BACSE, A0A174WHC9_9BACE, D7JAF7_9BACE, D1JMF7_BACFG, A0A412X780_BACUN, A0A3E4WJU1_PHOVU, A0A3E4MPI7_9BACT, I8YB17_BACOV |
| KEGG ID | bdo:EL88_14275, parc:CI960_13805, bfr:BF2837 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MKILLY |
| Transmembrane helix | 7-26 | FFARYLLAPLFVAVMIFVLT |
| Outside | 27-40 | GIKTIKSKLSLKKL |
| Transmembrane helix | 41-60 | IIFILLASIAVALPSLFGFL |
| Inside | 61-64 | KNEY |
| Transmembrane helix | 65-84 | VWGGLTFTILSYILLGALFC |
| Outside | 85-103 | KLSTSDLFGAIGIGSSRTA |
| Transmembrane helix | 104-126 | VILTLTTICALGGWCYYLLFELI |
| Inside | 127-130 | SKLP |
| Transmembrane helix | 131-150 | YSLWNTTNILWFAIPYLIMY |
| Outside | 151-292 | SRTLFLDIPHPIYTPWELSYGTFDRKYWDNIDNFGFRTVKVKIKRNIKDPTYASLVVRLPNEISLGNWFNWVIEDQNRRFPQNKIETEKEDMQIGWMFYTSKWFNFPLFIRILDPTLTSEGNKIKNNQTIYIRRVQVETKTS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9878 | - | - |
Protein sequence: 293 a.a.
Nucleotide sequence: 879 bp