Detailed information of component protein


Summary

Component ID T6CP011079
Component protein type TssF
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (592 a.a.); Nucleotide sequence (1776 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13495
Coordinate (Strand) 3240848..3242623 (+)
NCBI ID WP_011203023.1
RefSeq NC_006347
Uniprot ID A0A0F5JSA8_9BACT, A0A223HPL3_9BACT, Q64SE6_BACFR
KEGG ID parc:CI960_13790, bfr:BF2834
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-591 MSDKKQIAIKERILKQAMEFWGVSDIRDMDPVIDLLLEVFAHESNKLHQEIDQSDSRILHRLSRILIGNKWSLPKPAHALMTITPNHGECCELDAEDHFYAEKNIFGKGDIQVFITPLFSYKLVDAKVKAIAYNDSIRHSTDSFSTPTRFLGPKNRIADYCIWVGLDVSKEVLQKMDSVMFCIKPSDMGLLPFMNMAFFYDCTGNRLNAKTGLHVEDPYSNAHYFDEIRDFYSDLYFNVGIKDASKEKHTYREMFPGYVADCEVPDDSENLFWVKIVFPEIFTKESLENLEVYLNTFPVVNRQIVYKQHNFRSTGRIIPLKCPGRTQFLNIRSFQDNKGREYVNRLNQYEENPTGIFSLYFGDLERFDSDSARSLISKVLQLMKEDGSAFASMNPDALSTQLKELFNKINDIEKGLEATLKGDNKIKAFVLSVPQKDATNAEIKYWVTSGSLANGFNERTLIQQFNIEKYDASGIMLRTCMQGGTTHDSEQELINSLRYGLLSRERIISKEDIKSYLFHKLGKHVESVEVGNGVAISPDSKKGLIRVTEVKIKLGQFDKDEIPNLEELAHYLEKDLTERSVCNSNYKIKFV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9987 - -


  Protein sequence: 592 a.a.    

>T6CP011079 NC_006347:3240848-3242623 [Bacteroides fragilis YCH46] [TssF]
MSDKKQIAIKERILKQAMEFWGVSDIRDMDPVIDLLLEVFAHESNKLHQEIDQSDSRILHRLSRILIGNKWSLPKPAHAL
MTITPNHGECCELDAEDHFYAEKNIFGKGDIQVFITPLFSYKLVDAKVKAIAYNDSIRHSTDSFSTPTRFLGPKNRIADY
CIWVGLDVSKEVLQKMDSVMFCIKPSDMGLLPFMNMAFFYDCTGNRLNAKTGLHVEDPYSNAHYFDEIRDFYSDLYFNVG
IKDASKEKHTYREMFPGYVADCEVPDDSENLFWVKIVFPEIFTKESLENLEVYLNTFPVVNRQIVYKQHNFRSTGRIIPL
KCPGRTQFLNIRSFQDNKGREYVNRLNQYEENPTGIFSLYFGDLERFDSDSARSLISKVLQLMKEDGSAFASMNPDALST
QLKELFNKINDIEKGLEATLKGDNKIKAFVLSVPQKDATNAEIKYWVTSGSLANGFNERTLIQQFNIEKYDASGIMLRTC
MQGGTTHDSEQELINSLRYGLLSRERIISKEDIKSYLFHKLGKHVESVEVGNGVAISPDSKKGLIRVTEVKIKLGQFDKD
EIPNLEELAHYLEKDLTERSVCNSNYKIKFV*

  Nucleotide sequence: 1776 bp    

>T6CP011079 NC_006347:3240848-3242623 [Bacteroides fragilis YCH46] [TssF]
ATGTCAGACAAGAAACAAATCGCAATAAAGGAACGAATATTAAAGCAGGCTATGGAGTTTTGGGGTGTATCCGATATACG
CGATATGGACCCCGTGATAGATTTGCTGCTTGAAGTTTTTGCCCATGAGTCCAACAAGCTGCATCAAGAAATAGATCAGT
CCGATTCACGGATACTTCACCGCCTGTCCAGAATACTCATAGGAAACAAATGGTCGCTGCCAAAGCCGGCCCATGCGCTT
ATGACTATTACCCCCAATCATGGGGAATGTTGCGAACTTGATGCCGAAGATCATTTTTATGCAGAGAAAAACATATTTGG
CAAAGGGGATATTCAAGTCTTTATAACCCCTTTGTTTTCCTATAAACTGGTTGATGCAAAAGTCAAAGCAATCGCATACA
ACGATAGTATAAGGCATTCAACCGATAGCTTTAGCACTCCAACACGCTTCCTTGGCCCTAAAAACCGGATAGCGGATTAT
TGCATCTGGGTCGGGCTGGATGTGTCTAAAGAAGTCCTGCAAAAAATGGACTCTGTAATGTTTTGTATCAAGCCTTCCGA
TATGGGGTTGCTTCCGTTTATGAATATGGCTTTCTTCTATGACTGCACAGGAAACCGATTGAATGCAAAAACAGGCCTTC
ATGTTGAAGATCCATATAGTAATGCGCACTACTTTGATGAAATCCGCGATTTTTATAGTGACCTATATTTTAATGTGGGT
ATAAAAGATGCTTCCAAAGAGAAACATACCTACCGAGAAATGTTTCCCGGTTATGTGGCCGACTGCGAGGTCCCGGATGA
CTCTGAGAATCTCTTTTGGGTCAAGATAGTCTTTCCTGAAATATTCACGAAAGAAAGTCTTGAAAATCTGGAAGTATATT
TGAACACATTTCCGGTTGTAAACAGACAAATCGTTTACAAACAGCATAATTTCCGTTCCACCGGACGAATTATACCCCTG
AAATGTCCGGGCCGTACACAATTCTTGAACATACGCTCGTTTCAAGACAACAAAGGCCGGGAATATGTAAACCGACTGAA
CCAGTATGAGGAAAATCCGACAGGTATATTCAGCCTGTATTTTGGCGACCTTGAACGATTTGATTCGGACAGTGCCCGCT
CATTAATTTCAAAAGTGTTACAATTAATGAAAGAAGACGGGAGTGCTTTTGCTTCAATGAATCCGGATGCACTTTCGACG
CAGCTCAAAGAGTTGTTCAACAAGATAAATGATATAGAGAAAGGATTGGAGGCCACGCTAAAAGGAGATAACAAAATAAA
GGCCTTTGTTTTAAGTGTCCCACAAAAGGATGCGACCAATGCCGAGATAAAATATTGGGTGACTTCCGGATCTCTGGCGA
ACGGTTTCAATGAACGCACACTGATACAGCAATTCAACATAGAAAAATATGACGCTTCAGGCATCATGTTGCGCACTTGT
ATGCAAGGAGGAACAACGCATGATAGCGAACAGGAACTTATTAATAGTTTAAGGTATGGTCTGTTGTCCCGGGAACGGAT
TATATCTAAAGAAGACATCAAAAGCTACTTGTTTCACAAGCTGGGAAAACATGTTGAATCAGTCGAAGTCGGTAATGGCG
TAGCTATATCTCCTGACAGCAAAAAAGGATTAATCAGAGTGACAGAGGTCAAGATAAAACTTGGACAATTTGATAAAGAT
GAAATTCCCAATCTGGAAGAATTGGCCCATTATCTTGAAAAAGATTTGACTGAACGCTCTGTATGTAATTCAAACTATAA
AATCAAATTCGTATGA