Detailed information of component protein
Summary
| Component ID | T6CP011084 |
| Component protein type | TssO |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS13520 |
| Coordinate (Strand) | 3248043..3248540 (+) |
| NCBI ID | WP_005777317.1 |
| RefSeq | NC_006347 |
| Uniprot ID | A0A0F5JSB2_9BACT, A0A078RD81_PHOVU, A0A223HPG9_9BACT, A0A5M5BDN4_BACOV, Q64SE1_BACFR, A0A3E4MYL5_9BACT, A0A076IVP7_9BACT, A0A412VNC2_9BACE, F7LYZ2_9BACE, A0A3R6EZS1_9BACT, A0A412TEU3_BACSE, C3QWD1_9BACE, A0A174WHB1_9BACE, D7JAF9_9BACE, D1JMF5_BACFG, A0A412X7Y3_BACUN, A0A3E4WJM6_PHOVU, A0A3E4MPI1_9BACT |
| KEGG ID | bfr:BF2839, parc:CI960_13815, bdo:EL88_14285 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssO | PF17561.4 | 3.5e-06 | 14..153 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-15 | MEAENKIARLKAKLR |
| Transmembrane helix | 16-38 | FTLVFAIALIVTTTGGIVTIVTA |
| Outside | 39-165 | QKGISLLESKKAEYDNVFKKQAELNFQIEELFRDLNNLKTKRRNSSEHKHMQKLITKKRLLMENDIAMQADKSKYEVYKAMLEQIRVIQSSMDDLDRESKKRESNMEQLEKCRIKYQELTKNKLTKP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9119 | - | - |
Protein sequence: 166 a.a.
>T6CP011084 NC_006347:3248043-3248540 [Bacteroides fragilis YCH46] [TssO]
MEAENKIARLKAKLRFTLVFAIALIVTTTGGIVTIVTAQKGISLLESKKAEYDNVFKKQAELNFQIEELFRDLNNLKTKR
RNSSEHKHMQKLITKKRLLMENDIAMQADKSKYEVYKAMLEQIRVIQSSMDDLDRESKKRESNMEQLEKCRIKYQELTKN
KLTKP*
MEAENKIARLKAKLRFTLVFAIALIVTTTGGIVTIVTAQKGISLLESKKAEYDNVFKKQAELNFQIEELFRDLNNLKTKR
RNSSEHKHMQKLITKKRLLMENDIAMQADKSKYEVYKAMLEQIRVIQSSMDDLDRESKKRESNMEQLEKCRIKYQELTKN
KLTKP*
Nucleotide sequence: 498 bp
>T6CP011084 NC_006347:3248043-3248540 [Bacteroides fragilis YCH46] [TssO]
ATGGAAGCAGAAAACAAAATAGCTCGTTTGAAAGCGAAACTCCGATTTACTTTGGTATTCGCTATCGCACTGATTGTTAC
CACAACCGGAGGTATCGTAACGATTGTGACTGCACAAAAGGGAATATCCCTTCTTGAAAGCAAGAAGGCCGAATATGACA
ATGTGTTCAAGAAACAGGCAGAACTTAACTTCCAGATAGAAGAATTGTTCCGGGACTTGAACAATCTGAAGACCAAGCGG
CGAAATTCGAGTGAACACAAGCACATGCAAAAATTGATAACCAAAAAACGGTTATTAATGGAAAATGACATTGCGATGCA
GGCCGATAAAAGCAAGTACGAAGTGTATAAAGCTATGCTTGAACAGATCCGTGTCATCCAATCATCAATGGATGACCTTG
ACCGCGAAAGCAAAAAGCGTGAAAGCAACATGGAGCAACTTGAAAAGTGTAGAATCAAATATCAGGAATTAACCAAGAAT
AAACTGACGAAGCCATGA
ATGGAAGCAGAAAACAAAATAGCTCGTTTGAAAGCGAAACTCCGATTTACTTTGGTATTCGCTATCGCACTGATTGTTAC
CACAACCGGAGGTATCGTAACGATTGTGACTGCACAAAAGGGAATATCCCTTCTTGAAAGCAAGAAGGCCGAATATGACA
ATGTGTTCAAGAAACAGGCAGAACTTAACTTCCAGATAGAAGAATTGTTCCGGGACTTGAACAATCTGAAGACCAAGCGG
CGAAATTCGAGTGAACACAAGCACATGCAAAAATTGATAACCAAAAAACGGTTATTAATGGAAAATGACATTGCGATGCA
GGCCGATAAAAGCAAGTACGAAGTGTATAAAGCTATGCTTGAACAGATCCGTGTCATCCAATCATCAATGGATGACCTTG
ACCGCGAAAGCAAAAAGCGTGAAAGCAACATGGAGCAACTTGAAAAGTGTAGAATCAAATATCAGGAATTAACCAAGAAT
AAACTGACGAAGCCATGA