Detailed information of component protein


Summary

Component ID T6CP011083
Component protein type TssK
T6SS ID (Type) T6SS00909 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (383 a.a.); Nucleotide sequence (1149 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS13515
Coordinate (Strand) 3246874..3248022 (+)
NCBI ID WP_004322091.1
RefSeq NC_006347
Uniprot ID A0A0F5JSW7_9BACT, A0A223HPK0_9BACT, A0A415ITY9_9BACE, A0A3A5PA62_9BACE, Q64SE2_BACFR, A0A415HZP9_9BACE, A0A415BNF1_PHOVU, I9SU02_BACOV
KEGG ID parc:CI960_13810, bfr:BF2838
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-382 MKTLTYLPVNWVNGLKLTSQHFFANQYCQTEALNREAGRSLTSYNYGLGEVLEGIGDNLEIEISGDTMSTLCVRLKSCNAITKGGLPIVYYDGLYGDEKPCATISESGLQAEDSEYMVLISVDPYHLIPVGEPDPEEVPLHHPYVLPSIKLHIVPRNQVNKSFYSQNFLLVAEVCRQGNTYKINHQYIPPVQHSACHDGIKTFISQLARTLQSIKEDVKLIYSRNVADKRRDTLANNTFELCKAFSAFYNSRIFFIEQIALEQPPIYLVQAVNELANGLNSALQSLSETEREQLLQYFYEWTNVTPSEFITKIESLTKLMYDHTNINQSLQTAGAFVTLLSNMFHKMSELEYIGMVRENIIVGDESHETIEAQKKRSWSFIG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9296 - -


  Protein sequence: 383 a.a.    

>T6CP011083 NC_006347:3246874-3248022 [Bacteroides fragilis YCH46] [TssK]
MKTLTYLPVNWVNGLKLTSQHFFANQYCQTEALNREAGRSLTSYNYGLGEVLEGIGDNLEIEISGDTMSTLCVRLKSCNA
ITKGGLPIVYYDGLYGDEKPCATISESGLQAEDSEYMVLISVDPYHLIPVGEPDPEEVPLHHPYVLPSIKLHIVPRNQVN
KSFYSQNFLLVAEVCRQGNTYKINHQYIPPVQHSACHDGIKTFISQLARTLQSIKEDVKLIYSRNVADKRRDTLANNTFE
LCKAFSAFYNSRIFFIEQIALEQPPIYLVQAVNELANGLNSALQSLSETEREQLLQYFYEWTNVTPSEFITKIESLTKLM
YDHTNINQSLQTAGAFVTLLSNMFHKMSELEYIGMVRENIIVGDESHETIEAQKKRSWSFIG*

  Nucleotide sequence: 1149 bp    

>T6CP011083 NC_006347:3246874-3248022 [Bacteroides fragilis YCH46] [TssK]
ATGAAAACACTAACATATTTGCCTGTAAACTGGGTCAATGGTCTGAAGCTGACCAGCCAGCATTTCTTTGCAAACCAATA
TTGCCAAACGGAAGCTCTCAACCGCGAAGCAGGAAGGAGTCTGACCAGTTATAACTATGGTCTTGGAGAGGTCCTTGAAG
GGATAGGTGACAATCTTGAAATAGAGATTTCAGGTGATACCATGTCCACTCTCTGTGTCCGCCTGAAAAGCTGCAACGCT
ATCACCAAAGGCGGTCTGCCCATCGTTTATTACGACGGTTTATACGGGGATGAGAAACCCTGTGCAACCATTTCAGAATC
CGGTCTGCAAGCCGAGGACAGCGAGTATATGGTACTAATATCCGTAGATCCGTATCACTTGATACCTGTCGGTGAACCGG
ACCCGGAAGAGGTGCCTTTGCATCACCCGTATGTCTTGCCGAGCATAAAACTCCATATCGTTCCCAGAAACCAAGTCAAC
AAATCTTTCTACAGCCAGAATTTTTTGCTGGTGGCAGAGGTATGCAGACAAGGGAATACCTATAAAATCAATCATCAATA
TATTCCACCGGTACAACATTCCGCTTGCCACGATGGGATTAAAACATTCATTTCCCAATTGGCACGTACCCTACAGTCGA
TAAAAGAAGACGTGAAACTCATTTACAGCAGGAATGTTGCTGACAAGCGTAGAGATACGCTTGCCAATAATACATTTGAG
CTGTGTAAGGCTTTCTCGGCCTTTTACAACTCAAGAATCTTCTTTATCGAACAAATCGCCTTAGAGCAACCGCCGATATA
TCTTGTGCAGGCCGTGAATGAGCTTGCAAACGGTCTGAACTCCGCTCTTCAAAGTCTTTCTGAAACGGAAAGAGAACAAT
TGCTCCAATACTTCTATGAGTGGACCAATGTCACACCCTCTGAATTTATCACGAAGATAGAGAGCCTAACCAAGCTTATG
TATGACCATACCAATATAAACCAATCATTGCAGACGGCAGGGGCATTTGTGACACTGCTCAGCAATATGTTCCACAAAAT
GAGTGAACTGGAATACATCGGAATGGTTCGTGAGAATATTATAGTAGGAGACGAAAGTCACGAAACAATAGAGGCTCAAA
AGAAACGATCATGGTCGTTTATAGGTTGA