Detailed information of component protein
Summary
| Component ID | T6CP011077 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00909  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (156 a.a.); Nucleotide sequence (468 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS13485 |
| Coordinate (Strand) | 3239783..3240250 (-) |
| NCBI ID | WP_004310151.1 |
| RefSeq | NC_006347 |
| Uniprot ID | G6ATT9_9BACT, S3Z8W3_BACSE, A0A0F5JST1_9BACT, A0A078RB20_PHOVU, A0A223HPG3_9BACT, A0A415ITV5_9BACE, A0A3A5P722_9BACE, A0A5M5BDQ6_BACOV, Q64SE8_BACFR, A0A3E4MYH9_9BACT, A0A076IUF6_9BACT, A0A3R6HX34_9BACT, A0A412VNC8_9BACE, A0A414C3Y1_9BACT, A0A414PH87_BACSE, C3QWD8_9BACE, A0A174WRW2_9BACE, S0FD46_9BACT, D7JAF2_9BACE, D4WGR4_BACOV, D4VMW2_9BACE, D1JMG2_BACFG, A0A414BCN3_BACUN, A0A3E4WJS0_PHOVU, A0A3E4MPS0_9BACT |
| KEGG ID | bfr:BF2832, parc:CI960_13780, bdo:EL88_14250 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-155 | MAIYNYGIGGNEVKVDANESIAEIPSNRTLIVQKLTDEAPAAPESVYGLETIEDVFQRFEPTVDLCHVDAEGNEIKEIMTFTGLGDFGAKKIKEKSDFLSKLDIEKEQGVRITRQLTSNRALQKALENPEVKNAIMDVIESSIEEILANQKKVEL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9908 | - | - |
Protein sequence: 156 a.a.
>T6CP011077 NC_006347:c3240250-3239783 [Bacteroides fragilis YCH46] [TssB]
MAIYNYGIGGNEVKVDANESIAEIPSNRTLIVQKLTDEAPAAPESVYGLETIEDVFQRFEPTVDLCHVDAEGNEIKEIMT
FTGLGDFGAKKIKEKSDFLSKLDIEKEQGVRITRQLTSNRALQKALENPEVKNAIMDVIESSIEEILANQKKVEL*
MAIYNYGIGGNEVKVDANESIAEIPSNRTLIVQKLTDEAPAAPESVYGLETIEDVFQRFEPTVDLCHVDAEGNEIKEIMT
FTGLGDFGAKKIKEKSDFLSKLDIEKEQGVRITRQLTSNRALQKALENPEVKNAIMDVIESSIEEILANQKKVEL*
Nucleotide sequence: 468 bp
>T6CP011077 NC_006347:c3240250-3239783 [Bacteroides fragilis YCH46] [TssB]
ATGGCAATCTACAATTATGGAATTGGAGGCAACGAAGTAAAAGTCGATGCGAACGAATCCATCGCGGAAATCCCCTCCAA
CCGAACTTTGATAGTTCAAAAACTGACAGATGAAGCTCCTGCGGCTCCGGAAAGCGTGTATGGTTTGGAAACCATTGAAG
ATGTGTTCCAACGTTTTGAACCAACAGTTGACTTATGCCACGTGGATGCGGAAGGTAATGAAATCAAGGAAATCATGACA
TTCACCGGACTTGGAGACTTCGGAGCCAAGAAGATTAAAGAGAAGAGTGATTTCTTGAGTAAACTTGACATTGAGAAAGA
GCAGGGTGTCAGAATAACTCGCCAGCTTACTTCCAACCGCGCTTTACAGAAAGCACTTGAAAATCCGGAAGTCAAAAATG
CCATTATGGACGTGATTGAATCATCAATCGAGGAGATTCTGGCAAATCAAAAGAAAGTAGAACTTTAA
ATGGCAATCTACAATTATGGAATTGGAGGCAACGAAGTAAAAGTCGATGCGAACGAATCCATCGCGGAAATCCCCTCCAA
CCGAACTTTGATAGTTCAAAAACTGACAGATGAAGCTCCTGCGGCTCCGGAAAGCGTGTATGGTTTGGAAACCATTGAAG
ATGTGTTCCAACGTTTTGAACCAACAGTTGACTTATGCCACGTGGATGCGGAAGGTAATGAAATCAAGGAAATCATGACA
TTCACCGGACTTGGAGACTTCGGAGCCAAGAAGATTAAAGAGAAGAGTGATTTCTTGAGTAAACTTGACATTGAGAAAGA
GCAGGGTGTCAGAATAACTCGCCAGCTTACTTCCAACCGCGCTTTACAGAAAGCACTTGAAAATCCGGAAGTCAAAAATG
CCATTATGGACGTGATTGAATCATCAATCGAGGAGATTCTGGCAAATCAAAAGAAAGTAGAACTTTAA