Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01277 experimental
T6SS type Type i1
Strain Aliivibrio fischeri strain FQ-A001
Replicon (RefSeq) chromosome (NZ_SJSX01000002)
Location 747470..766109
Function anti-bacterial
Comment T6SS is a functional antibacterial system
References
[1] Guckes KR, Cecere AG, Wasilko NP, Williams AL, Bultman KM, Mandel MJ, Miyashiro T. et al (2019) Incompatibility of Vibrio fischeri Strains during Symbiosis Establishment Depends on Two Functionally Redundant hcp Genes.. J Bacteriol. 201(19). [PudMed:31331977]
[2] Speare L, Cecere AG, Guckes KR, Smith S, Wollenberg MS, Mandel MJ, Miyashiro T, Septer AN. et al (2018) Bacterial symbionts use a type VI secretion system to eliminate competitors in their natural host.. Proc Natl Acad Sci U S A. 115(36):E8528-E8537. [PudMed:30127013]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTagHTssATssBTssCTssETssFTssGTssHTssJTssKTssLTssM
Number111111111111


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Component ID
Component
Locus tag (Gene)
Coordinate
Strand
Size (bp)
NCBI ID
Product
VFFQA001_RS05415743013..743762+7501027729110DUF481 domain-containing protein
VFFQA001_RS05420743950..745845+18961597592720diguanylate cyclase
VFFQA001_RS05425745846..746805-9601597592721serine/threonine protein kinase
VFFQA001_RS05430746802..747473-672491561111serine/threonine-protein phosphatase
T6CP015871TssMVFFQA001_RS05435 (tssM)747470..750991-35221597592722type VI secretion system membrane subunit TssM
T6CP015872TssLVFFQA001_RS05440751002..751835-834491561116type IVB secretion system protein IcmH/DotU
T6CP015873TssKVFFQA001_RS05445 (tssK)751837..753159-13231597592723type VI secretion system baseplate subunit TssK
T6CP015874TssJVFFQA001_RS05450 (tssJ)753171..753662-492499580846type VI secretion system lipoprotein TssJ
T6CP015875TagHVFFQA001_RS05455 (tagH)753699..755009-13111597592724type VI secretion system-associated FHA domain protein TagH
VFFQA001_RS05465755144..756712-15691597592725sigma-54-dependent Fis family transcriptional regulator
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flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Regulator ID
Locus tag (Gene)
Regulator type
Regulatory pathway
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Target (Regulation)
REG0124 experimentalVFFQA001_02105 (rpoN)proteinGlobal regulatorAliivibrio fischeri strain FQ-A001chromosome (NZ_SJSX01000002)62995..64464 (-)501526930hcp1/hcp transcript (↓)
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experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Effector ID
Locus tag (Gene)
Classification
Cognate immunity protein
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
No matching records found

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Immunity protein ID
Locus tag (Gene)
Cognate effector
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
No matching records found

experimental Experimental investigation has been performed.
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Accessory protein ID
Locus tag (Gene)
Type            
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Related structure protein
Related effector
No matching records found