Detailed information of component protein


Summary

Component ID T6CP015873
Component protein type TssK
T6SS ID (Type) T6SS01277 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (441 a.a.); Nucleotide sequence (1323 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS05445
Coordinate (Strand) 751837..753159 (-)
NCBI ID 1597592723
RefSeq NZ_SJSX01000002
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.8e-129 16..437
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-440 MQKVIWKEGMLLRPQHFQQSDRYYQNQLQVRTQKQHRFNWGFHSLSFDSHHLSVGKIVISQASGILPDGSLFDIQHQTTPIVWESDAPKTNLDLYLAISLSTINSPEARDEKETEINTRYVSHDLTISDNNAQVQNLQTISCGELDFHIITEEEIDNHWVKIKLCEIKQVTPEGAIQLNPNFEASFINGVHSSLVHRSLREVLTLVTHKADILAERITKSGHATSEIGDFLLLQLLNKYEPQLHYLNKCSQYHPEELFLLLSSLQGELSTYDSGHRRPDLKLSYNHKEQGESFDQILFHLRKQLNQSLKQNAFEIPLQKRNHGVLIAPISDDSLLQEATFILAARSHTDAESLRKQLPPQLKVGPVEKIRNLVNLQLPGITCRSLSVAPRQVPFHGDYCYFTLDLTSNDRSQLTQSGGFAFHIAGDFPELSLFFWAIRNS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9843 - -


  Protein sequence: 441 a.a.    

>T6CP015873 NZ_SJSX01000002:c753159-751837 [Aliivibrio fischeri] [TssK]
MQKVIWKEGMLLRPQHFQQSDRYYQNQLQVRTQKQHRFNWGFHSLSFDSHHLSVGKIVISQASGILPDGSLFDIQHQTTP
IVWESDAPKTNLDLYLAISLSTINSPEARDEKETEINTRYVSHDLTISDNNAQVQNLQTISCGELDFHIITEEEIDNHWV
KIKLCEIKQVTPEGAIQLNPNFEASFINGVHSSLVHRSLREVLTLVTHKADILAERITKSGHATSEIGDFLLLQLLNKYE
PQLHYLNKCSQYHPEELFLLLSSLQGELSTYDSGHRRPDLKLSYNHKEQGESFDQILFHLRKQLNQSLKQNAFEIPLQKR
NHGVLIAPISDDSLLQEATFILAARSHTDAESLRKQLPPQLKVGPVEKIRNLVNLQLPGITCRSLSVAPRQVPFHGDYCY
FTLDLTSNDRSQLTQSGGFAFHIAGDFPELSLFFWAIRNS*

  Nucleotide sequence: 1323 bp    

>T6CP015873 NZ_SJSX01000002:c753159-751837 [Aliivibrio fischeri] [TssK]
ATGCAAAAAGTTATATGGAAAGAAGGCATGCTATTGCGGCCTCAACACTTCCAACAAAGTGATCGTTACTATCAAAATCA
ACTGCAAGTACGTACGCAGAAGCAACACAGGTTTAATTGGGGGTTCCATTCTCTGAGTTTTGATAGTCATCATTTATCTG
TTGGAAAGATCGTTATCAGTCAGGCTAGTGGTATTTTACCCGATGGTTCACTATTTGATATTCAACATCAAACAACCCCT
ATTGTTTGGGAGTCTGATGCACCTAAAACAAACTTAGATCTGTATTTAGCGATTTCTTTATCGACTATAAATAGTCCGGA
AGCTCGCGATGAAAAAGAAACCGAAATTAACACTCGTTATGTTTCTCACGATTTAACCATTTCAGATAATAATGCCCAAG
TACAAAACTTACAGACTATCAGCTGTGGTGAGTTGGATTTTCATATTATTACCGAAGAAGAGATTGATAATCATTGGGTT
AAAATCAAACTATGTGAAATTAAACAAGTCACTCCTGAAGGTGCGATTCAACTCAACCCTAATTTTGAAGCGAGTTTTAT
CAATGGTGTTCACTCGTCTCTTGTTCATCGTTCACTACGAGAAGTCTTAACTCTCGTTACTCATAAAGCCGATATTTTAG
CCGAACGTATTACCAAATCAGGACACGCAACCTCAGAAATTGGTGACTTCTTATTGCTTCAATTATTAAATAAGTACGAG
CCTCAACTCCACTATCTAAATAAGTGCTCTCAATACCATCCAGAGGAGCTCTTTTTATTACTTTCATCTTTGCAAGGAGA
GTTGTCTACTTATGATTCAGGTCATCGTCGACCAGATCTTAAATTATCATACAATCATAAAGAACAGGGCGAGTCATTTG
ATCAGATCTTATTTCATTTGCGTAAACAACTGAATCAGTCATTGAAACAAAACGCTTTTGAGATACCACTACAAAAACGC
AATCACGGTGTACTTATTGCCCCTATTTCTGATGATAGCTTATTGCAAGAAGCCACCTTTATTCTCGCGGCTCGCTCTCA
TACCGACGCTGAAAGCTTACGAAAACAACTACCACCACAATTAAAAGTCGGACCTGTTGAAAAAATTCGCAACCTTGTAA
ACCTTCAATTACCGGGGATCACTTGTCGCTCACTTTCTGTAGCCCCAAGACAAGTCCCTTTCCATGGTGATTATTGTTAT
TTCACCCTTGATTTAACCTCAAACGATCGCTCTCAACTAACGCAATCTGGAGGATTTGCCTTCCATATTGCAGGTGATTT
CCCTGAGCTTTCTCTTTTCTTTTGGGCAATAAGGAATAGTTAA