Detailed information of component protein


Summary

Component ID T6CP015871
Component protein type TssM
T6SS ID (Type) T6SS01277 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (1174 a.a.); Nucleotide sequence (3522 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 747470..750991 (-)
NCBI ID 1597592722
RefSeq NZ_SJSX01000002
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-15 MKSFFNSLLNTLKKT
Transmembrane helix 16-38 WCWSLLLTLFIALLLCLFGKHIA
Outside 39-52 IANTPLIETTTGKT
Transmembrane helix 53-72 LTVIICLLLWGAFNLALWGL
Inside 73-446 AKREAQKEENKEAYEAAQSEMAFIREHSTILKTKLEAAIATIKRAGLYGKLNNNVKYQLPWYMVIGPQNSGKTTLLECSGLDFPLNQTDGHYTRDIQNSQHCEWYFANHAVLLDAAGRFFDQHENELSKPIWGNFLKALRNKRRRRPLNGVILTIDITTLQSPDESAIEVQARYVRERLQELRHDLSSDMPIYFLLTKMDKVEGFEPFFSSLSREEMDQVFGVTFNEGEGQQADKIKHEFEKLILRIDSQVMSRLHDERDVMKRAELLQFPRQLSFLAERLALFSELAFTKTRYHQASHLRGLYLTSVPEPTNTQTESTTSGIGQNLGISSRVLPTYKHQRGFFIRKLLEEVIFPNSELATLDEKYEKQVKLKN
Transmembrane helix 447-469 MAVYAASFAIVIGFGSLWATSFL
Outside 470-1173 TNHHKQQELLSLSSDYNQQIVHLSPLAPSIELLPTLNTLLAATQVYTKEGETLTDEFAGLQQGDKLRKAAEAAYHRSLLSLLLPKVTSELEYQVANNQDNREFLTPSLRAYLMLNLHEHLDKAYLEQWMGLHWSYLYSGSATEQKELQNHFSNLLAIEFDPVPLNNNLIAKSRKFLREANTSELVYQQLKQDAKEMDLRDIKISDHLGPNQNLFNHTNTIIPGLYTQKGYKAVFLSKGLDQVKQLIEENWVIGLSSDLSANEIRGLYADVEDLYFHDYIKYWKEAVDQLQIKPSKNMDEAILQISNITGSSQPILKLLNLVKENTTFVDKAQVASKTAGQVKKLPVNTKLKKVASLGLHSVEERSQSARKAVSNQFEPLNLLLTDKDQATIPLEDALVVINELSGRLSMVKFSPNPDSSAFKIARDRMQGIPNELNDIRVMAETLPQPLQQWWKQISNNAWGIILNHSRKHVQMVYHDKVVTHYDVALSGRYPFRNSSHDVNIADFDEFFQNGGILDNFFDAYLSSFVYKQKGKFKQKSLHGRSLGLSDSFLDQYNYGLTIQRMFYGSKGKEANVSFRIAPFELDASALQSTFYYGKNKFAYRHGPIQKKQFTWPITNQRQYVSFVLQDLSGSKVVNQQNSGPWAFFRVLDKFRVNKYRGQDVIKVDLENKGMKAKYLIYSDRTPNPFNRKILTNFYLPKRING


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9750 - -


  Protein sequence: 1174 a.a.    


  Nucleotide sequence: 3522 bp