Detailed information of component protein


Summary

Component ID T6CP015872
Component protein type TssL
T6SS ID (Type) T6SS01277 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (278 a.a.); Nucleotide sequence (834 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 751002..751835 (-)
NCBI ID 491561116
RefSeq NZ_SJSX01000002
Uniprot ID Q5E657_ALIF1, B5FD79_ALIFM, A0A1B9PCV3_ALIFS
KEGG ID vfm:VFMJ11_1076, vfi:VF_0994
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-238 MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKESYQDIELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFVDEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEKLSRNPAKYLDLLELMYLCLSLGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTS
Transmembrane helix 239-261 WVGIVCVVVFSLCAIYGGFYYVL
Outside 262-277 DQQSEHVIQAFQQIDL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9700 - -


  Protein sequence: 278 a.a.    


  Nucleotide sequence: 834 bp