Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VFFQA001_RS05475 |
Coordinate (Strand) | 759297..760337 (-) |
NCBI ID | 1027712260 |
RefSeq | NZ_SJSX01000002 |
Uniprot ID | UPI0007C4A19C |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 1.4e-81 | 57..331 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-346 | MATTNGATTSNLVSITSNQIPIQLGITIEHIGHLSLMKALDHVCHHLKTKHDDWDLDQAYDRIQFVANPSQGFAPREIQSIKVITHDDGLPKVIMTLNMLSLIGASSPLPAFYNDYLLQDENNVLKSFLDIFHHRLHRLIRSVWQKYRYNAAFREGANDPFSQYIFALLGLKNPELRDDDSINWSRLFPYLGLLSQRVRSANTIEALLRYYFQHSAIHIEECILRHCSIPTQQLCELGQNNAVLSSTSVLGSSAPDRANKFRIHIKELTWDHFHSFLTDKPNWIALNQLVQFTVKDPLDFDIQLHLKKDEPRPLTLSVDNECCLGWTSWLGSNPNEGRITLSGKTL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9833 | - | - |
Protein sequence: 347 a.a.
>T6CP015877 NZ_SJSX01000002:c760337-759297 [Aliivibrio fischeri] [TssG]
MATTNGATTSNLVSITSNQIPIQLGITIEHIGHLSLMKALDHVCHHLKTKHDDWDLDQAYDRIQFVANPSQGFAPREIQS
IKVITHDDGLPKVIMTLNMLSLIGASSPLPAFYNDYLLQDENNVLKSFLDIFHHRLHRLIRSVWQKYRYNAAFREGANDP
FSQYIFALLGLKNPELRDDDSINWSRLFPYLGLLSQRVRSANTIEALLRYYFQHSAIHIEECILRHCSIPTQQLCELGQN
NAVLSSTSVLGSSAPDRANKFRIHIKELTWDHFHSFLTDKPNWIALNQLVQFTVKDPLDFDIQLHLKKDEPRPLTLSVDN
ECCLGWTSWLGSNPNEGRITLSGKTL*
MATTNGATTSNLVSITSNQIPIQLGITIEHIGHLSLMKALDHVCHHLKTKHDDWDLDQAYDRIQFVANPSQGFAPREIQS
IKVITHDDGLPKVIMTLNMLSLIGASSPLPAFYNDYLLQDENNVLKSFLDIFHHRLHRLIRSVWQKYRYNAAFREGANDP
FSQYIFALLGLKNPELRDDDSINWSRLFPYLGLLSQRVRSANTIEALLRYYFQHSAIHIEECILRHCSIPTQQLCELGQN
NAVLSSTSVLGSSAPDRANKFRIHIKELTWDHFHSFLTDKPNWIALNQLVQFTVKDPLDFDIQLHLKKDEPRPLTLSVDN
ECCLGWTSWLGSNPNEGRITLSGKTL*
Nucleotide sequence: 1041 bp
>T6CP015877 NZ_SJSX01000002:c760337-759297 [Aliivibrio fischeri] [TssG]
ATGGCTACCACGAATGGGGCAACAACCTCTAATTTAGTCTCGATAACATCAAATCAAATTCCTATTCAATTAGGAATAAC
CATTGAACATATTGGACATTTATCTTTGATGAAGGCATTGGATCATGTATGTCATCACTTAAAAACCAAACATGATGACT
GGGATCTTGATCAGGCCTATGACCGTATTCAATTTGTAGCGAACCCTTCGCAAGGTTTCGCTCCTCGTGAAATTCAAAGC
ATTAAAGTAATCACTCATGATGATGGGCTACCAAAAGTCATTATGACGTTAAATATGTTGTCATTAATTGGTGCTTCATC
GCCCTTGCCTGCTTTTTATAATGATTATTTACTGCAGGATGAAAACAACGTTCTAAAGTCATTTCTTGATATTTTCCATC
ACAGATTACATCGTTTAATTCGTAGTGTTTGGCAAAAGTACCGTTATAACGCAGCGTTTAGAGAAGGCGCCAATGATCCG
TTTTCACAATATATATTTGCATTGCTTGGATTAAAAAATCCTGAACTACGTGATGATGACTCAATTAACTGGTCTCGCTT
ATTTCCTTACCTTGGTTTGCTAAGTCAAAGGGTCAGATCAGCAAATACAATCGAAGCGCTATTACGATACTACTTCCAGC
ATTCAGCGATACATATTGAAGAGTGCATTCTTCGTCACTGTTCAATTCCAACACAACAACTCTGTGAATTGGGCCAGAAC
AATGCCGTTCTTTCTAGCACCTCTGTTTTGGGCAGTAGTGCACCAGATAGAGCAAATAAATTTCGTATACATATAAAAGA
ATTAACGTGGGATCACTTCCACTCTTTTTTAACCGATAAACCAAATTGGATCGCACTCAATCAATTAGTGCAATTTACCG
TTAAAGATCCACTCGATTTTGATATTCAACTTCATTTAAAAAAAGATGAACCCCGTCCATTAACCTTATCAGTTGATAAT
GAATGCTGCTTAGGTTGGACGAGTTGGCTAGGTTCAAACCCGAATGAAGGACGTATTACACTTTCAGGGAAAACATTATG
A
ATGGCTACCACGAATGGGGCAACAACCTCTAATTTAGTCTCGATAACATCAAATCAAATTCCTATTCAATTAGGAATAAC
CATTGAACATATTGGACATTTATCTTTGATGAAGGCATTGGATCATGTATGTCATCACTTAAAAACCAAACATGATGACT
GGGATCTTGATCAGGCCTATGACCGTATTCAATTTGTAGCGAACCCTTCGCAAGGTTTCGCTCCTCGTGAAATTCAAAGC
ATTAAAGTAATCACTCATGATGATGGGCTACCAAAAGTCATTATGACGTTAAATATGTTGTCATTAATTGGTGCTTCATC
GCCCTTGCCTGCTTTTTATAATGATTATTTACTGCAGGATGAAAACAACGTTCTAAAGTCATTTCTTGATATTTTCCATC
ACAGATTACATCGTTTAATTCGTAGTGTTTGGCAAAAGTACCGTTATAACGCAGCGTTTAGAGAAGGCGCCAATGATCCG
TTTTCACAATATATATTTGCATTGCTTGGATTAAAAAATCCTGAACTACGTGATGATGACTCAATTAACTGGTCTCGCTT
ATTTCCTTACCTTGGTTTGCTAAGTCAAAGGGTCAGATCAGCAAATACAATCGAAGCGCTATTACGATACTACTTCCAGC
ATTCAGCGATACATATTGAAGAGTGCATTCTTCGTCACTGTTCAATTCCAACACAACAACTCTGTGAATTGGGCCAGAAC
AATGCCGTTCTTTCTAGCACCTCTGTTTTGGGCAGTAGTGCACCAGATAGAGCAAATAAATTTCGTATACATATAAAAGA
ATTAACGTGGGATCACTTCCACTCTTTTTTAACCGATAAACCAAATTGGATCGCACTCAATCAATTAGTGCAATTTACCG
TTAAAGATCCACTCGATTTTGATATTCAACTTCATTTAAAAAAAGATGAACCCCGTCCATTAACCTTATCAGTTGATAAT
GAATGCTGCTTAGGTTGGACGAGTTGGCTAGGTTCAAACCCGAATGAAGGACGTATTACACTTTCAGGGAAAACATTATG
A