Detailed information of component protein


Summary

Component ID T6CP015882
Component protein type TssA
T6SS ID (Type) T6SS01277 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (517 a.a.); Nucleotide sequence (1551 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS05500
Coordinate (Strand) 764559..766109 (-)
NCBI ID 1597592728
RefSeq NZ_SJSX01000002
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 7.7e-74 222..481
ImpA_N PF06812.14 1.3e-15 8..108
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-516 MFSYDSILSDISDKDRLGTDLSYEPEFELIEEEIKKSTNLFATSKTDWSVVHDNSLNLINETSKDYRLLYWLCLSITKRNLAIDNNELIRVINDFIIKFKDDIYPKRKRSLYSSINQIINIITDTTKSIIDNIDNINDVDILITQLSALDDSIESIFENNTDNLSPVISLAKKLKKRLKSETENNEIVAPQSIPSAPTQAPSATSTISFSQNDITNDRDANKAFRHLQDVARTLSKYWLSQKLNDEKVYQLNRTLTWLTISQLPASNDDNVTMLKPVPQARIQYFQQLKAELNHSTLIIEMEESLSKSPFWIDGHFMVWESLTALNHHDAAQSITDQLSLLINKTPSITDLKFDDGTEFASESTKAWIQQHCSTSTHATTSPVNHFDESQNSSDWEDAFQEALTLLQQHSLNEVMQPLIRGHHQSRSDREAFFWQFTQAKLLFQSSKYDLANSLFSWLDKQYSQSVLAHWDPILEERLLELWLQCHNKLSKKDQDSQLLAHIRERLCCLNPIRVLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9878 - -


  Protein sequence: 517 a.a.    

>T6CP015882 NZ_SJSX01000002:c766109-764559 [Aliivibrio fischeri] [TssA]
MFSYDSILSDISDKDRLGTDLSYEPEFELIEEEIKKSTNLFATSKTDWSVVHDNSLNLINETSKDYRLLYWLCLSITKRN
LAIDNNELIRVINDFIIKFKDDIYPKRKRSLYSSINQIINIITDTTKSIIDNIDNINDVDILITQLSALDDSIESIFENN
TDNLSPVISLAKKLKKRLKSETENNEIVAPQSIPSAPTQAPSATSTISFSQNDITNDRDANKAFRHLQDVARTLSKYWLS
QKLNDEKVYQLNRTLTWLTISQLPASNDDNVTMLKPVPQARIQYFQQLKAELNHSTLIIEMEESLSKSPFWIDGHFMVWE
SLTALNHHDAAQSITDQLSLLINKTPSITDLKFDDGTEFASESTKAWIQQHCSTSTHATTSPVNHFDESQNSSDWEDAFQ
EALTLLQQHSLNEVMQPLIRGHHQSRSDREAFFWQFTQAKLLFQSSKYDLANSLFSWLDKQYSQSVLAHWDPILEERLLE
LWLQCHNKLSKKDQDSQLLAHIRERLCCLNPIRVLN*

  Nucleotide sequence: 1551 bp    

>T6CP015882 NZ_SJSX01000002:c766109-764559 [Aliivibrio fischeri] [TssA]
ATGTTTTCTTACGACTCAATCCTTTCTGATATATCAGATAAGGATCGCTTAGGCACAGATTTAAGTTATGAGCCTGAGTT
TGAATTAATTGAAGAAGAAATAAAAAAATCAACAAATCTGTTTGCTACAAGCAAGACGGACTGGTCTGTCGTGCATGATA
ACTCATTGAATTTAATAAACGAAACTAGCAAGGATTATAGATTACTTTACTGGTTATGCTTATCTATAACTAAGAGAAAC
CTTGCTATTGATAATAATGAGTTAATTCGTGTTATTAATGATTTCATCATTAAATTCAAAGACGATATTTATCCAAAGAG
AAAAAGAAGTCTATATTCCTCTATTAATCAAATCATTAATATAATAACAGATACCACAAAATCTATTATCGATAATATAG
ACAATATAAATGATGTAGATATATTAATTACACAATTATCAGCATTAGATGATTCCATTGAGTCTATTTTTGAAAATAAT
ACAGATAATTTATCTCCTGTTATTTCATTAGCCAAAAAACTTAAAAAACGTTTAAAATCAGAAACCGAAAATAATGAGAT
AGTAGCACCACAATCTATACCATCCGCACCAACACAAGCTCCATCAGCAACATCAACTATCTCATTTTCTCAAAATGACA
TCACAAACGATAGAGATGCAAATAAAGCATTTCGTCACTTACAAGATGTAGCGAGAACACTCTCAAAATACTGGTTATCT
CAGAAACTTAATGACGAAAAAGTGTATCAATTAAACCGGACTTTAACCTGGTTAACCATATCTCAATTGCCAGCAAGTAA
TGACGATAATGTAACTATGTTAAAGCCTGTTCCTCAGGCCAGAATACAATATTTTCAACAATTAAAAGCAGAATTAAATC
ACTCTACATTAATTATAGAAATGGAAGAGAGCCTTTCTAAATCACCATTTTGGATCGATGGTCATTTCATGGTTTGGGAA
AGCCTAACAGCACTTAATCATCATGATGCAGCACAAAGCATCACTGATCAGCTGTCTTTATTAATCAACAAAACACCAAG
CATCACGGATCTTAAATTCGATGATGGAACTGAGTTTGCTAGTGAATCAACAAAGGCTTGGATACAGCAGCACTGTTCGA
CTTCAACTCATGCGACTACTTCCCCAGTAAATCATTTCGATGAATCACAAAATAGCAGTGACTGGGAAGATGCCTTCCAA
GAAGCTCTCACATTGTTACAGCAACACAGCTTAAACGAAGTGATGCAACCTCTTATTCGCGGTCATCACCAATCACGTTC
CGATAGAGAAGCCTTTTTTTGGCAATTTACACAGGCAAAACTGCTATTTCAATCCAGTAAATACGATTTAGCTAATTCAC
TTTTCTCATGGCTGGATAAGCAATATTCCCAATCCGTACTCGCTCATTGGGATCCTATTCTGGAAGAACGTTTACTTGAA
CTGTGGCTTCAATGCCATAACAAATTATCTAAAAAAGACCAAGACAGTCAGTTGCTAGCACACATACGTGAAAGGCTCTG
CTGTTTAAACCCAATACGAGTTCTTAATTAA