Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VFFQA001_RS05490 |
Coordinate (Strand) | 762564..764039 (-) |
NCBI ID | 499580853 |
RefSeq | NZ_SJSX01000002 |
Uniprot ID | Q5E648_ALIF1, B5FD89_ALIFM |
KEGG ID | vfm:VFMJ11_1086, vfi:VF_1003 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 4.1e-133 | 65..364 |
VipB_2 | PF18945.2 | 5.3e-45 | 378..488 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-491 | MSDTSTAQELDNQVTVGLLDQIVAQTNLTPEDETYGIAKRGVSAFIEELLKPQNQEEPVKKALIDKMITEIDQRLSKQVDEILHHSSFQQLESAWRGLKLLVDRTDFRENIKIEVINVSKTDLLEDFEDASEITQSGLYKHVYTNEFGTFGGQPVGAIIGNYDFGPSAPDIKNLQNLASVAAMSHAPFISAAGPKFFGLESFEGLPDLKDLNDHFESPQYAKWQSFREQEDSRYVGLTLPRFLLRQPYDPEENPVKAFNYHENVSATHEDYLWGNTAFTMATRITESFANFRWCPNIIGPQSGGAVEDLPLHHFESMGDIETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKFFGNTEEGKNAELNFRLGTQLPYLFIISRLAHYIKVLQREQIGSWKERTDLEQELNTWIRQYIADQENPPAEVRSRRPLRAANIEVMDVEGNPGWYKVNLSVRPHFKYMGSDFTLSLVGKLDQE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9954 | - | - |
Protein sequence: 492 a.a.
>T6CP015880 NZ_SJSX01000002:c764039-762564 [Aliivibrio fischeri] [TssC]
MSDTSTAQELDNQVTVGLLDQIVAQTNLTPEDETYGIAKRGVSAFIEELLKPQNQEEPVKKALIDKMITEIDQRLSKQVD
EILHHSSFQQLESAWRGLKLLVDRTDFRENIKIEVINVSKTDLLEDFEDASEITQSGLYKHVYTNEFGTFGGQPVGAIIG
NYDFGPSAPDIKNLQNLASVAAMSHAPFISAAGPKFFGLESFEGLPDLKDLNDHFESPQYAKWQSFREQEDSRYVGLTLP
RFLLRQPYDPEENPVKAFNYHENVSATHEDYLWGNTAFTMATRITESFANFRWCPNIIGPQSGGAVEDLPLHHFESMGDI
ETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKFFGNTEEGKNAELNFRLGTQLPYLFIISRLAHY
IKVLQREQIGSWKERTDLEQELNTWIRQYIADQENPPAEVRSRRPLRAANIEVMDVEGNPGWYKVNLSVRPHFKYMGSDF
TLSLVGKLDQE*
MSDTSTAQELDNQVTVGLLDQIVAQTNLTPEDETYGIAKRGVSAFIEELLKPQNQEEPVKKALIDKMITEIDQRLSKQVD
EILHHSSFQQLESAWRGLKLLVDRTDFRENIKIEVINVSKTDLLEDFEDASEITQSGLYKHVYTNEFGTFGGQPVGAIIG
NYDFGPSAPDIKNLQNLASVAAMSHAPFISAAGPKFFGLESFEGLPDLKDLNDHFESPQYAKWQSFREQEDSRYVGLTLP
RFLLRQPYDPEENPVKAFNYHENVSATHEDYLWGNTAFTMATRITESFANFRWCPNIIGPQSGGAVEDLPLHHFESMGDI
ETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKFFGNTEEGKNAELNFRLGTQLPYLFIISRLAHY
IKVLQREQIGSWKERTDLEQELNTWIRQYIADQENPPAEVRSRRPLRAANIEVMDVEGNPGWYKVNLSVRPHFKYMGSDF
TLSLVGKLDQE*
Nucleotide sequence: 1476 bp
>T6CP015880 NZ_SJSX01000002:c764039-762564 [Aliivibrio fischeri] [TssC]
ATGTCAGATACAAGCACAGCACAAGAGCTAGATAATCAAGTTACTGTTGGACTTCTTGATCAAATCGTAGCTCAAACCAA
TTTAACTCCAGAAGATGAAACATACGGTATTGCTAAGCGTGGTGTCAGCGCTTTTATTGAAGAGTTATTAAAACCTCAAA
ATCAAGAAGAGCCAGTCAAAAAAGCACTGATTGATAAAATGATCACAGAGATTGATCAACGCTTAAGTAAACAAGTGGAC
GAAATTCTTCACCACTCGTCTTTTCAACAACTTGAATCTGCTTGGCGTGGATTAAAATTACTCGTTGATCGCACCGATTT
TCGTGAAAATATTAAAATCGAAGTGATTAATGTATCTAAAACTGACTTGTTAGAGGACTTCGAAGATGCTTCAGAAATTA
CTCAATCAGGACTCTACAAGCATGTCTACACTAACGAGTTTGGTACATTTGGTGGCCAACCTGTTGGTGCTATTATTGGT
AATTATGACTTTGGTCCTTCTGCGCCTGATATTAAAAACCTTCAAAACTTGGCTTCTGTAGCAGCAATGTCTCATGCACC
ATTTATTTCAGCCGCAGGTCCTAAATTCTTTGGCTTAGAATCATTTGAGGGATTACCTGATCTAAAAGATCTTAATGATC
ATTTTGAAAGTCCTCAATATGCAAAATGGCAAAGCTTCCGTGAACAAGAAGACTCAAGATATGTAGGTTTAACATTACCT
AGATTCTTATTACGTCAACCTTATGACCCAGAAGAAAACCCTGTAAAAGCATTCAATTACCATGAAAATGTTTCTGCTAC
TCACGAAGATTATTTATGGGGAAATACCGCTTTTACAATGGCAACTCGTATCACTGAAAGTTTTGCTAATTTCCGTTGGT
GTCCAAATATTATTGGTCCTCAATCAGGTGGTGCAGTGGAAGACCTACCTCTCCACCACTTTGAAAGTATGGGTGATATT
GAAACTAAGATCCCAACAGAAGTTCTTGTTTCCGACCGCAGAGAATATGAATTAGCAGAAGAAGGCTTTATTGCTCTCAC
CATGCGCAAAGGCTCAGATAATGCGGCTTTCTTCTCTGCTAACTCTGTTCAAAAAGCAAAGTTTTTCGGTAATACAGAAG
AAGGCAAAAACGCTGAGTTAAATTTCCGCTTAGGTACGCAGCTCCCTTACTTATTCATTATTAGCCGCCTTGCACATTAC
ATTAAGGTGCTACAACGTGAACAAATCGGTAGCTGGAAAGAACGTACAGACTTAGAGCAAGAGTTAAACACTTGGATTCG
TCAATACATTGCTGATCAAGAAAATCCACCAGCTGAAGTTCGTAGCCGTCGCCCACTTCGTGCCGCAAATATCGAAGTAA
TGGACGTTGAAGGCAATCCAGGCTGGTACAAAGTAAACCTATCAGTTCGCCCTCACTTTAAATACATGGGTTCTGATTTT
ACGTTGTCGCTAGTTGGTAAATTGGATCAAGAGTAA
ATGTCAGATACAAGCACAGCACAAGAGCTAGATAATCAAGTTACTGTTGGACTTCTTGATCAAATCGTAGCTCAAACCAA
TTTAACTCCAGAAGATGAAACATACGGTATTGCTAAGCGTGGTGTCAGCGCTTTTATTGAAGAGTTATTAAAACCTCAAA
ATCAAGAAGAGCCAGTCAAAAAAGCACTGATTGATAAAATGATCACAGAGATTGATCAACGCTTAAGTAAACAAGTGGAC
GAAATTCTTCACCACTCGTCTTTTCAACAACTTGAATCTGCTTGGCGTGGATTAAAATTACTCGTTGATCGCACCGATTT
TCGTGAAAATATTAAAATCGAAGTGATTAATGTATCTAAAACTGACTTGTTAGAGGACTTCGAAGATGCTTCAGAAATTA
CTCAATCAGGACTCTACAAGCATGTCTACACTAACGAGTTTGGTACATTTGGTGGCCAACCTGTTGGTGCTATTATTGGT
AATTATGACTTTGGTCCTTCTGCGCCTGATATTAAAAACCTTCAAAACTTGGCTTCTGTAGCAGCAATGTCTCATGCACC
ATTTATTTCAGCCGCAGGTCCTAAATTCTTTGGCTTAGAATCATTTGAGGGATTACCTGATCTAAAAGATCTTAATGATC
ATTTTGAAAGTCCTCAATATGCAAAATGGCAAAGCTTCCGTGAACAAGAAGACTCAAGATATGTAGGTTTAACATTACCT
AGATTCTTATTACGTCAACCTTATGACCCAGAAGAAAACCCTGTAAAAGCATTCAATTACCATGAAAATGTTTCTGCTAC
TCACGAAGATTATTTATGGGGAAATACCGCTTTTACAATGGCAACTCGTATCACTGAAAGTTTTGCTAATTTCCGTTGGT
GTCCAAATATTATTGGTCCTCAATCAGGTGGTGCAGTGGAAGACCTACCTCTCCACCACTTTGAAAGTATGGGTGATATT
GAAACTAAGATCCCAACAGAAGTTCTTGTTTCCGACCGCAGAGAATATGAATTAGCAGAAGAAGGCTTTATTGCTCTCAC
CATGCGCAAAGGCTCAGATAATGCGGCTTTCTTCTCTGCTAACTCTGTTCAAAAAGCAAAGTTTTTCGGTAATACAGAAG
AAGGCAAAAACGCTGAGTTAAATTTCCGCTTAGGTACGCAGCTCCCTTACTTATTCATTATTAGCCGCCTTGCACATTAC
ATTAAGGTGCTACAACGTGAACAAATCGGTAGCTGGAAAGAACGTACAGACTTAGAGCAAGAGTTAAACACTTGGATTCG
TCAATACATTGCTGATCAAGAAAATCCACCAGCTGAAGTTCGTAGCCGTCGCCCACTTCGTGCCGCAAATATCGAAGTAA
TGGACGTTGAAGGCAATCCAGGCTGGTACAAAGTAAACCTATCAGTTCGCCCTCACTTTAAATACATGGGTTCTGATTTT
ACGTTGTCGCTAGTTGGTAAATTGGATCAAGAGTAA