Detailed information of component protein


Summary

Component ID T6CP015876
Component protein type TssH
T6SS ID (Type) T6SS01277 experimental (Type i1)
Strain Aliivibrio fischeri strain FQ-A001
Replicon chromosome
Sequence Protein sequence (861 a.a.); Nucleotide sequence (2583 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFFQA001_RS05470
Coordinate (Strand) 756718..759300 (-)
NCBI ID 1597592726
RefSeq NZ_SJSX01000002
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.5e-42 593..758
AAA_lid_9 PF17871.3 3.1e-29 351..443
ClpB_D2-small PF10431.11 4.3e-12 764..833
AAA PF00004.31 8.7e-09 211..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-860 MINVELPQLIKTLDKESHLALEQAAQLCVTRGGNEVLCEDFILAALNNPQSFWNKACQQYNVSTDVLIEALQHGRKSTSSESNHPVLSTALIEWLQESYLFSMLEMQLSEVLAANLLLTLLSHPNKYGHTPYYRELSVIPVASLKQQVEGLVSCANRDSHSSAEHQNALDSYTTNYTQLAKDNKIDPVLCRDSEIRQMIDILARRRKNNPMIVGEAGVGKTALVEGLAIKIAQGEVPDMLENVALLSLDLGLLQAGASIKGEFERRLNLVITAVQESPTPIILFIDEAHTLIGAGGQAGSNDAANLLKPALARGELRTIGATTWSEYKKHIEKDPALARRFQPVKVNEPNVTQAVTILRGLAERYEESHGVYVRDDAIIAAAELSARYISGRQLPDKAIDLLDTACARVKINLKAKPESLETLLHIIAITQRELDCVLRDQQAGIHIEENTITQLKEKLSQTHLEAEQLEQEWQTQKELAEALLTSRIDIAQCDDKEEKHRLICNQQEIHQALADAQHTHSLVNYETCPSLVAEVVSHWTGIPMSTLQRGQATQVLTIKSKLKEQIKGQDQAVIALEKAIQATAAGLNNPNSPTGVFLFVGPSGVGKTQTAQAIADLMYGGEQFLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAVRQRPYSVVLLDEVEKADPEIMNLFYQIFDKGVANDGEGREINFKQTLIIMTSNLASDQIEALCNQEEKPTTDALTKAIRPTLNQYFKPALVGRMTVVPFFPLDMESMEALVDIRLKQLTEQLSLQQITLHYDEAIIQHITQSCTLTETGARNIDAIINGQLKPAFSSQILLALARKEPLTSISLCIDENGQVFCEFED


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9921 - -


  Protein sequence: 861 a.a.    

>T6CP015876 NZ_SJSX01000002:c759300-756718 [Aliivibrio fischeri] [TssH]
MINVELPQLIKTLDKESHLALEQAAQLCVTRGGNEVLCEDFILAALNNPQSFWNKACQQYNVSTDVLIEALQHGRKSTSS
ESNHPVLSTALIEWLQESYLFSMLEMQLSEVLAANLLLTLLSHPNKYGHTPYYRELSVIPVASLKQQVEGLVSCANRDSH
SSAEHQNALDSYTTNYTQLAKDNKIDPVLCRDSEIRQMIDILARRRKNNPMIVGEAGVGKTALVEGLAIKIAQGEVPDML
ENVALLSLDLGLLQAGASIKGEFERRLNLVITAVQESPTPIILFIDEAHTLIGAGGQAGSNDAANLLKPALARGELRTIG
ATTWSEYKKHIEKDPALARRFQPVKVNEPNVTQAVTILRGLAERYEESHGVYVRDDAIIAAAELSARYISGRQLPDKAID
LLDTACARVKINLKAKPESLETLLHIIAITQRELDCVLRDQQAGIHIEENTITQLKEKLSQTHLEAEQLEQEWQTQKELA
EALLTSRIDIAQCDDKEEKHRLICNQQEIHQALADAQHTHSLVNYETCPSLVAEVVSHWTGIPMSTLQRGQATQVLTIKS
KLKEQIKGQDQAVIALEKAIQATAAGLNNPNSPTGVFLFVGPSGVGKTQTAQAIADLMYGGEQFLTTINMSEFQEKHTVS
RLIGSPPGYVGYGEGGVLTEAVRQRPYSVVLLDEVEKADPEIMNLFYQIFDKGVANDGEGREINFKQTLIIMTSNLASDQ
IEALCNQEEKPTTDALTKAIRPTLNQYFKPALVGRMTVVPFFPLDMESMEALVDIRLKQLTEQLSLQQITLHYDEAIIQH
ITQSCTLTETGARNIDAIINGQLKPAFSSQILLALARKEPLTSISLCIDENGQVFCEFED*

  Nucleotide sequence: 2583 bp    

>T6CP015876 NZ_SJSX01000002:c759300-756718 [Aliivibrio fischeri] [TssH]
ATGATTAACGTAGAACTACCTCAATTAATTAAAACATTAGATAAAGAGTCACATCTTGCGTTAGAGCAAGCTGCACAATT
ATGCGTAACTCGTGGCGGTAATGAAGTGTTATGTGAAGACTTTATTCTTGCGGCACTGAATAATCCACAAAGTTTCTGGA
ACAAAGCTTGTCAGCAATACAATGTATCTACTGACGTTTTAATTGAAGCGCTACAACACGGAAGAAAAAGTACCTCATCT
GAAAGTAATCATCCTGTCTTATCAACCGCGTTAATCGAATGGCTTCAAGAAAGTTATCTCTTCTCCATGTTAGAAATGCA
ACTTTCTGAAGTACTAGCAGCAAATTTACTGCTTACTCTCCTTTCTCATCCAAACAAATATGGACACACTCCCTATTACC
GTGAGTTAAGTGTTATTCCTGTCGCTTCATTAAAACAACAGGTTGAAGGCTTAGTCAGCTGCGCGAATCGAGATTCTCAT
TCCTCTGCTGAACATCAAAATGCACTCGATTCATACACAACCAATTACACACAATTGGCGAAAGATAATAAAATTGATCC
TGTTTTATGCCGAGATTCTGAAATTCGTCAAATGATCGATATTTTAGCTCGTCGTCGTAAAAATAACCCAATGATTGTTG
GCGAAGCAGGGGTTGGAAAAACTGCATTAGTAGAAGGTTTAGCAATAAAAATAGCTCAAGGTGAAGTGCCGGATATGCTT
GAAAATGTCGCCCTTCTCTCTTTAGACCTTGGACTACTTCAAGCAGGAGCAAGCATTAAAGGTGAATTTGAACGTCGCTT
AAATTTGGTTATCACAGCAGTTCAAGAAAGTCCGACACCTATTATCTTATTTATTGATGAAGCACATACTCTAATTGGTG
CTGGTGGACAAGCAGGTAGCAATGATGCAGCCAATCTTCTCAAACCTGCACTCGCACGAGGTGAATTACGTACGATAGGT
GCAACAACGTGGTCTGAATATAAAAAACACATAGAAAAAGATCCTGCACTTGCACGACGTTTCCAACCTGTAAAAGTGAA
CGAACCTAATGTTACTCAAGCCGTAACTATTTTACGAGGTCTTGCGGAGCGCTATGAAGAAAGTCACGGTGTTTATGTAA
GAGATGATGCCATCATTGCCGCTGCTGAATTATCTGCACGTTACATTAGCGGTCGCCAACTACCTGATAAAGCAATCGAT
CTTCTTGATACGGCTTGTGCACGTGTGAAGATCAATTTAAAAGCAAAGCCTGAGTCATTAGAAACGTTATTGCATATTAT
TGCTATTACTCAACGTGAGCTGGATTGTGTATTAAGAGATCAACAAGCTGGGATTCATATTGAAGAAAATACCATCACCC
AATTGAAAGAAAAGCTGTCTCAAACCCACCTTGAAGCTGAACAGTTAGAGCAAGAATGGCAAACACAAAAAGAATTAGCC
GAAGCGCTACTAACTTCTCGAATTGACATTGCACAATGTGACGATAAAGAAGAAAAGCATCGATTAATTTGCAACCAACA
AGAGATACATCAAGCGCTAGCGGATGCACAACATACACACTCTTTAGTCAATTACGAAACCTGTCCATCTTTGGTTGCTG
AGGTAGTATCCCATTGGACTGGGATTCCAATGAGTACATTACAACGTGGACAAGCGACTCAAGTACTTACGATAAAATCA
AAGCTAAAAGAACAGATCAAAGGCCAAGATCAAGCCGTCATCGCCTTAGAAAAAGCAATCCAAGCCACTGCAGCAGGATT
AAATAATCCTAATTCTCCAACTGGTGTATTTCTTTTTGTTGGGCCAAGTGGTGTAGGCAAAACTCAAACCGCTCAAGCAA
TTGCCGATTTAATGTATGGCGGCGAACAATTTCTCACCACCATCAATATGTCAGAGTTTCAAGAAAAACACACTGTATCT
CGTCTAATTGGTTCGCCTCCTGGCTACGTTGGATATGGTGAAGGCGGTGTGTTAACTGAAGCGGTTCGTCAACGCCCTTA
TTCAGTTGTATTACTTGATGAAGTAGAAAAAGCAGACCCTGAAATCATGAACCTTTTCTATCAAATTTTTGATAAAGGCG
TCGCTAATGATGGTGAAGGAAGAGAAATCAACTTCAAACAAACGCTAATAATCATGACGTCAAACTTAGCCTCTGATCAA
ATTGAAGCACTTTGTAATCAAGAAGAAAAACCGACAACAGATGCATTAACTAAAGCCATCCGTCCAACGTTAAATCAGTA
CTTTAAACCAGCCTTAGTCGGACGAATGACCGTTGTCCCATTCTTCCCTCTTGATATGGAAAGTATGGAAGCCCTTGTGG
ATATTCGCCTTAAACAATTAACCGAACAGCTGTCATTGCAACAAATCACTCTTCATTATGACGAAGCAATTATTCAACAC
ATTACTCAAAGTTGTACATTAACTGAAACCGGTGCGAGAAATATTGATGCCATTATTAATGGACAACTAAAACCTGCATT
TTCATCCCAAATACTGCTAGCACTGGCTAGAAAAGAACCATTAACCAGTATTTCTCTATGTATTGATGAAAATGGCCAAG
TCTTTTGCGAGTTTGAGGACTAG