Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01240 experimental
T6SS type Type i5
Strain Agrobacterium fabrum strain 1D132
Replicon (RefSeq) chromosome (NZ_CP033023)
Location 1429744..1454431
Function anti-bacterial
Comment T6SS exhibits antibacterial and secrete hcp activity
References
[1] Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang JH, Lai EM. et al (2019) Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness.. Mol Plant Microbe Interact. 32(8):961-971. [PudMed:30830835]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTae4TagFTssATssBTssCTssDTssETssFTssGTssHTssITssKTssLTssM
Number11112111111111


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Component ID
Component
Locus tag (Gene)
Coordinate
Strand
Size (bp)
NCBI ID
Product
At1D132_RS21295 (proP)1425460..1426980-1521WP_162992447.1glycine betaine/L-proline transporter ProP
At1D132_RS213001427146..1427442-297WP_006315910.1PRC-barrel domain-containing protein
At1D132_RS213051427707..1428843+1137WP_092772441.1polysaccharide export protein
At1D132_RS213101428852..1429757-906WP_162992448.1protein kinase
T6CP015538TagFAt1D132_RS21315 (tagF)1429744..1431159-1416WP_092772439.1type VI secretion system-associated protein TagF
T6CP015539TssMAt1D132_RS21320 (tssM)1431242..1434721-3480WP_092772437.1type VI secretion system membrane subunit TssM
T6CP015540TssLAt1D132_RS21325 (tssL)1434718..1436223-1506WP_092772435.1type VI secretion system protein TssL, long form
T6CP015541TssKAt1D132_RS21330 (tssK)1436220..1437560-1341WP_092772433.1type VI secretion system baseplate subunit TssK
At1D132_RS213351437550..1438749-1200WP_010973758.1type VI secretion system-associated FHA domain protein
T6CP015542TssGAt1D132_RS21340 (tssG)1438760..1439764-1005WP_010973759.1type VI secretion system baseplate subunit TssG
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flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Regulator ID
Locus tag (Gene)
Regulator type
Regulatory pathway
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Target (Regulation)
No matching records found

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Immunity protein ID
Locus tag (Gene)
Cognate effector
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
No matching records found

experimental Experimental investigation has been performed.
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Accessory protein ID
Locus tag (Gene)
Type            
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Related structure protein
Related effector
No matching records found