Detailed information of component protein


Summary

Component ID T6CP015541
Component protein type TssK
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21330
Coordinate (Strand) 1436220..1437560 (-)
NCBI ID WP_092772433.1
RefSeq NZ_CP033023
Uniprot ID UPI000B88A9E1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 7.8e-156 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MRHENRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSNLRGVLPDGTPFEAPEDSDLPPPLDLDESVKNAIIYLALPARQPGKADMSTSGRNDTNNVRFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDDLSGYDLIGLARVIEVRSDRAVILDPDFIPPSLSCAAAPRLHELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQILNRADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATNFPPYRHEDLKATFGAVFDDLRTSLSAVLEQAAVAIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDIRRRLPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLPYRSGTVYFEIDTQSPLWKQLDTSGAIALHLAGEFPGLEMEMWALRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9832 - -


  Protein sequence: 447 a.a.    

>T6CP015541 NZ_CP033023:c1437560-1436220 [Agrobacterium fabrum] [TssK]
MRHENRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSNLRGVLPDGTPFEAPED
SDLPPPLDLDESVKNAIIYLALPARQPGKADMSTSGRNDTNNVRFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDD
LSGYDLIGLARVIEVRSDRAVILDPDFIPPSLSCAAAPRLHELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQ
ILNRADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATNFPPYRHEDLKATFGAVFDDLRTSLSAVLEQAAV
AIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDIRRRLPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLP
YRSGTVYFEIDTQSPLWKQLDTSGAIALHLAGEFPGLEMEMWALRE*

  Nucleotide sequence: 1341 bp    

>T6CP015541 NZ_CP033023:c1437560-1436220 [Agrobacterium fabrum] [TssK]
ATGAGACATGAGAACCGTGTTGCCTGGAGCGAGGGCATGTTTCTTCGCGTTCAGCATTTTCAGCAATCCGACCGCTGGAC
CGAACGTCTGGTGCGCAACACCACGCGCAACCTTTCGCCCTACCCCTGGGGCATCGCCGAGATCGGTGTGGACCGCAGCG
CATTATCGATAGGGCAATTCGCGCTGTCGAACCTGCGCGGCGTGCTTCCCGACGGCACACCCTTCGAGGCACCTGAGGAT
TCCGACCTGCCGCCGCCGCTCGATCTCGATGAAAGCGTCAAGAACGCCATCATCTATCTTGCCCTGCCGGCCCGGCAGCC
GGGCAAGGCGGATATGTCCACCAGCGGCCGCAATGACACGAACAATGTGCGCTTCACCGCCTCGAGCTATGAAGTCACCG
ACACCAATATCGAAACGGATTTCGTGGCCCCGATCGACGTCGGCCGCCTCAGCCTGAAATTCCTCAAAACCGGTGACGAT
CTTTCCGGTTACGATCTCATCGGGCTGGCGCGGGTGATCGAAGTCCGCTCCGACCGTGCGGTCATTCTCGATCCGGATTT
CATACCTCCAAGCCTCAGCTGTGCAGCAGCGCCCCGCCTCCACGAATTGCTGACGGAGCTTCTGGGGATCGTGCGCCACC
GGGCCCAGGCGATTGCCGAACGCATCGGCGACCCGACGATCCGGGGAACGGCGGAAGTGGGCGATTATTTCCTTCTGCAG
ATCCTCAACCGGGCCGATCCGCTGCTCGCGCATCGCGGTGCCAACGCCACACGTTTTCACCCCATCCGCTTTTACGAAGA
CTGCATCCAGCTTGCCGGAGAGCTTGCCACCTTCACCACGGACAGGAAGCGGGCGACGAATTTCCCGCCCTATCGGCACG
AAGATCTGAAGGCCACCTTCGGTGCTGTCTTTGATGATCTGCGCACCTCGCTGTCGGCGGTTCTGGAACAGGCAGCCGTG
GCAATCGAACTGGTGGAACGCCGCCATGGCGTCCGCGTCGGCACCATCCACGACCGCACGCTTCTGCGCGATGCCGGTTT
CGTGCTGGCCGTGCGCGCGGATATGGCCGCCGAGGATATTCGCCGCCGCCTGCCGGCACAGATCAAGGTCGGGCCGGTGG
AACGAATTTCCGAACTGGTCAATGTGGCGCTGCCGGGCATCCCCGTGCGGTCCCTGCCGGTCCTGCCGCGGCAACTGCCC
TATCGATCCGGCACCGTCTATTTCGAGATCGACACGCAGTCGCCACTCTGGAAACAGCTTGATACCTCAGGTGCCATTGC
CCTGCATCTGGCGGGCGAGTTCCCCGGGCTTGAAATGGAAATGTGGGCGTTACGCGAATGA