Detailed information of component protein


Summary

Component ID T6CP015545
Component protein type TssC
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (465 a.a.); Nucleotide sequence (1395 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21360
Coordinate (Strand) 1442871..1444265 (-)
NCBI ID WP_006315896.1
RefSeq NZ_CP033023
Uniprot ID A0A7Y0XMY0_9HYPH, A9CGG4_AGRFC, A0A7I0RMA4_9HYPH, A0A083ZIC7_RHIRD
KEGG ID atu:Atu4340
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.5e-104 14..325
VipB_2 PF18945.2 2.3e-40 335..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-464 MAHQSFPDARIFADQLIALIDEALTGQVNAILHHPDFQAMEGRWRGLAMVVREAGRSTDVKVKLLNASWRDLARNTERATDFDQSHLFEVVYNREFGMPGGEPVGLMIGDYAFSPDDLQGADSITTLSQIGMVAAAAFCPFVAAAAPSAVGLQDFSELSRVHDFSSLKQEKSRLRWNALRARDDSRFVGLVAPRVLLRSPYRPYARGRDDGFPFREHVAESGETLLWGNAAFAFATVVVRNFVDSGWFADLRGVTQDAVDGGMLSPRQLPPFDLGIESNGLSAQPPVEVQLTTGQEQQFSDLGIVPVSTTYLSGMAIFNANQSLHAPGHYSTEAARQNARLAAMLQYVLCASRFSHYLKVIMRDDIGQLSDATTIERKLESWLSSYTLGNDDAEASLRTRYPLRSAGINVFEVPGKPGTFSCTVRLQPHFQLDDVSTSFHLIAETMMPPAAASRSSAEPQRISA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9968 - -


  Protein sequence: 465 a.a.    

>T6CP015545 NZ_CP033023:c1444265-1442871 [Agrobacterium fabrum] [TssC]
MAHQSFPDARIFADQLIALIDEALTGQVNAILHHPDFQAMEGRWRGLAMVVREAGRSTDVKVKLLNASWRDLARNTERAT
DFDQSHLFEVVYNREFGMPGGEPVGLMIGDYAFSPDDLQGADSITTLSQIGMVAAAAFCPFVAAAAPSAVGLQDFSELSR
VHDFSSLKQEKSRLRWNALRARDDSRFVGLVAPRVLLRSPYRPYARGRDDGFPFREHVAESGETLLWGNAAFAFATVVVR
NFVDSGWFADLRGVTQDAVDGGMLSPRQLPPFDLGIESNGLSAQPPVEVQLTTGQEQQFSDLGIVPVSTTYLSGMAIFNA
NQSLHAPGHYSTEAARQNARLAAMLQYVLCASRFSHYLKVIMRDDIGQLSDATTIERKLESWLSSYTLGNDDAEASLRTR
YPLRSAGINVFEVPGKPGTFSCTVRLQPHFQLDDVSTSFHLIAETMMPPAAASRSSAEPQRISA*

  Nucleotide sequence: 1395 bp    

>T6CP015545 NZ_CP033023:c1444265-1442871 [Agrobacterium fabrum] [TssC]
ATGGCGCATCAGTCCTTTCCGGACGCCCGCATTTTCGCCGACCAGCTCATCGCCCTCATCGATGAGGCGCTGACCGGCCA
GGTGAACGCCATTCTCCACCATCCCGATTTTCAGGCGATGGAGGGGAGATGGCGCGGGCTCGCCATGGTCGTGCGCGAAG
CGGGCCGCAGCACCGACGTGAAGGTGAAACTGCTGAACGCCAGCTGGCGCGACCTTGCCCGGAACACGGAACGCGCCACC
GACTTCGACCAGAGCCATCTTTTCGAAGTCGTCTATAACCGCGAATTCGGCATGCCCGGCGGCGAACCGGTGGGCTTGAT
GATCGGTGACTACGCCTTTTCTCCCGATGATCTTCAGGGTGCAGATTCCATCACCACGCTGTCGCAGATCGGCATGGTGG
CCGCTGCGGCCTTCTGCCCCTTCGTGGCGGCAGCCGCACCTTCCGCCGTCGGCCTGCAGGATTTTTCCGAACTCAGCCGG
GTTCATGACTTTTCCTCGCTGAAGCAGGAGAAATCTCGGCTTCGCTGGAATGCGCTTCGCGCCCGCGATGATTCTCGCTT
CGTCGGCCTTGTCGCGCCGCGTGTTTTGCTGCGCTCTCCCTACAGGCCCTATGCGCGTGGACGCGATGACGGGTTTCCAT
TCCGCGAACATGTGGCGGAAAGCGGCGAGACACTGCTCTGGGGTAATGCCGCCTTCGCCTTTGCGACCGTGGTCGTGCGC
AACTTCGTCGATTCCGGCTGGTTTGCGGATCTGCGCGGTGTGACGCAGGATGCGGTGGATGGCGGCATGCTCTCGCCCCG
GCAATTGCCGCCGTTCGATCTCGGCATCGAGAGCAACGGTCTTTCCGCCCAGCCGCCCGTCGAGGTGCAACTGACGACGG
GACAGGAACAGCAGTTTTCCGATCTCGGCATCGTGCCCGTCTCCACCACCTATCTTTCCGGCATGGCAATCTTCAACGCC
AACCAGTCCCTGCATGCACCCGGCCATTATTCCACCGAAGCGGCGAGGCAGAACGCCCGCCTTGCCGCGATGCTGCAATA
TGTGCTGTGCGCCTCCCGGTTCTCGCATTATCTCAAGGTCATCATGCGTGATGACATCGGCCAGCTGAGCGATGCCACGA
CGATCGAGCGCAAGCTGGAAAGCTGGCTCTCTTCCTACACGCTCGGCAATGACGATGCGGAAGCGTCGTTGCGCACGCGC
TATCCGCTGCGCTCTGCCGGGATCAATGTCTTCGAGGTTCCCGGCAAGCCGGGGACATTCTCCTGCACCGTGCGCCTCCA
GCCGCATTTCCAGCTCGATGACGTCTCCACGAGCTTCCACCTCATTGCCGAAACCATGATGCCGCCCGCCGCCGCATCCC
GGTCTTCGGCCGAGCCGCAAAGGATATCCGCATGA