Detailed information of component protein


Summary

Component ID T6CP015538
Component protein type TagF
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (472 a.a.); Nucleotide sequence (1416 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21315
Coordinate (Strand) 1429744..1431159 (-)
NCBI ID WP_092772439.1
RefSeq NZ_CP033023
Uniprot ID UPI0008807F26
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 1.7e-41 19..153
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-471 MADQASRSTQTAAESDRIGFFGKLPSHGDFISDGLERELIATFDDWMRSGMHACADMFAGRWTEIFSSSPPIRFIVESGIWGNCAYAGVLVPSADRVGRKYPLAIIAQLNGFRSHPRTLYLDDTWFMAVEALAETSMTGDFDMFRFNASIKKLRLPKPRDEDDAPEMVRGRAPTSLWWHIDPVSRRARGLKFDGKPRASDFLRLFSDMTGKGDEDGSTAAPAPATVQEKTKQQIPPVTPAPAPPAEQPSSVIYSYATHPGTRLSLNADALFVSQTPSLFAIADGQGDTHSAAEAARLATNILAETPDAENPEMMAQLIRGKLGTVNSLLLSRQATGADGRPMASVVIASIIARTLSVLWSGDARAYLLKNGTMHQLSRDHVFVGMKKQLSQCVGLSQQFRPDIVFDEWGLQDRLLLCSYPLVQILRERAIAEIVFNTPVKDCANALVQEALIENARENVSAIVIGNRREQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9815 - -


  Protein sequence: 472 a.a.    

>T6CP015538 NZ_CP033023:c1431159-1429744 [Agrobacterium fabrum] [TagF]
MADQASRSTQTAAESDRIGFFGKLPSHGDFISDGLERELIATFDDWMRSGMHACADMFAGRWTEIFSSSPPIRFIVESGI
WGNCAYAGVLVPSADRVGRKYPLAIIAQLNGFRSHPRTLYLDDTWFMAVEALAETSMTGDFDMFRFNASIKKLRLPKPRD
EDDAPEMVRGRAPTSLWWHIDPVSRRARGLKFDGKPRASDFLRLFSDMTGKGDEDGSTAAPAPATVQEKTKQQIPPVTPA
PAPPAEQPSSVIYSYATHPGTRLSLNADALFVSQTPSLFAIADGQGDTHSAAEAARLATNILAETPDAENPEMMAQLIRG
KLGTVNSLLLSRQATGADGRPMASVVIASIIARTLSVLWSGDARAYLLKNGTMHQLSRDHVFVGMKKQLSQCVGLSQQFR
PDIVFDEWGLQDRLLLCSYPLVQILRERAIAEIVFNTPVKDCANALVQEALIENARENVSAIVIGNRREQG*

  Nucleotide sequence: 1416 bp    

>T6CP015538 NZ_CP033023:c1431159-1429744 [Agrobacterium fabrum] [TagF]
ATGGCCGATCAGGCATCAAGGTCCACGCAAACAGCGGCGGAAAGCGATCGCATCGGTTTCTTCGGCAAGCTCCCCAGCCA
TGGCGATTTCATTTCCGATGGGCTCGAGCGGGAATTGATCGCGACCTTCGACGACTGGATGCGATCCGGCATGCACGCCT
GCGCGGATATGTTCGCAGGCCGATGGACAGAGATATTCTCGTCGTCGCCGCCCATACGCTTCATCGTCGAAAGCGGCATA
TGGGGAAACTGCGCCTATGCCGGCGTGCTGGTGCCGAGCGCCGACCGGGTGGGCCGTAAATATCCGCTTGCCATCATTGC
CCAGCTCAACGGCTTCCGCAGCCATCCGCGAACACTCTATCTCGACGACACCTGGTTCATGGCCGTAGAGGCATTGGCCG
AGACATCGATGACCGGCGATTTCGACATGTTCCGGTTTAATGCCTCGATCAAGAAATTGCGCCTGCCGAAGCCGCGGGAC
GAGGATGACGCGCCGGAAATGGTCCGCGGCCGCGCGCCGACAAGCCTCTGGTGGCACATCGATCCCGTCAGCCGCCGTGC
ACGCGGCCTCAAATTCGACGGCAAGCCGAGAGCATCCGATTTTCTGCGCCTGTTCAGCGACATGACAGGCAAAGGCGACG
AGGACGGTTCAACGGCAGCGCCGGCGCCGGCAACGGTGCAGGAGAAGACAAAACAGCAAATACCGCCCGTGACACCCGCG
CCAGCCCCCCCAGCGGAACAGCCGTCATCTGTCATCTACAGCTATGCCACACATCCGGGAACGCGGCTTTCCCTGAATGC
GGATGCACTGTTCGTTTCCCAGACGCCTTCCCTCTTCGCCATAGCGGATGGACAAGGCGATACGCATAGCGCCGCAGAGG
CCGCGCGCCTCGCCACGAATATTCTTGCTGAAACGCCAGATGCCGAAAACCCGGAGATGATGGCGCAGCTGATCAGGGGA
AAGCTCGGCACCGTCAACAGCCTGCTCCTCTCCCGCCAGGCGACTGGTGCCGATGGCAGGCCGATGGCCAGCGTCGTCAT
AGCCTCGATCATCGCCCGCACGCTGAGCGTCCTGTGGTCCGGTGATGCGCGCGCCTATCTCCTGAAAAACGGCACCATGC
ACCAGCTTTCGCGCGATCACGTCTTTGTCGGCATGAAAAAACAGCTCTCGCAATGTGTCGGACTTTCCCAGCAATTCCGG
CCGGATATCGTCTTTGATGAGTGGGGTTTGCAGGACAGGCTGCTGCTGTGCAGCTACCCGCTCGTGCAAATCCTCCGAGA
ACGCGCCATTGCCGAGATCGTCTTCAACACCCCGGTCAAGGACTGCGCCAATGCCCTGGTCCAGGAAGCGCTGATCGAAA
ACGCCCGTGAGAATGTCAGCGCCATCGTGATTGGAAACCGGCGTGAGCAAGGCTAG