Detailed information of component protein


Summary

Component ID T6CP015549
Component protein type TssH
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21380
Coordinate (Strand) 1447746..1450424 (+)
NCBI ID WP_092733927.1
RefSeq NZ_CP033023
Uniprot ID UPI000887B3DE
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.7e-36 594..758
AAA_lid_9 PF17871.3 9.7e-27 363..462
ClpB_D2-small PF10431.11 8.1e-12 766..840
AAA PF00004.31 1.9e-11 223..332
Clp_N PF02861.22 5.6e-06 24..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-892 MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGIYAETFDELKIPLPVLKAEIGRSLEEAIIGDGEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLAMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDVPSALTSSGEAGSAQAAGQNDFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKTAVAEALALEIASGNVPEKLRNVRLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILKPALARGEVRTVAATTWSEYKKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSARYMPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERHLLSDELNWLLREPQDEDMQNRIQSIRDELERLEAGIDDLRGRYDAEMAELAALSEEQPAETGASNVSHLRPATEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLDVRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADLLYGGNSHLTTINMSEFKEEHKVSLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSELLSALSADPDTMPEGEALEALLMPELTKQFKPAFLGRTIILPFMPLGAEELARIVDMQIGKIRDRVLATYGTDLRLSDAARDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGENGFGIRAEAAGEADEFAVTEEVGVDKVAASDGATRRMRH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9980 - -


  Protein sequence: 893 a.a.    

>T6CP015549 NZ_CP033023:1447746-1450424 [Agrobacterium fabrum] [TssH]
MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGIYAETFDELKIPLPVLKAEIGRSLEEAIIGD
GEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLAMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDVP
SALTSSGEAGSAQAAGQNDFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKTAVAEALA
LEIASGNVPEKLRNVRLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILK
PALARGEVRTVAATTWSEYKKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSARY
MPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERHLLSDELNWLLREPQDEDMQNRIQSIRDELERLEAGIDDLR
GRYDAEMAELAALSEEQPAETGASNVSHLRPATEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLD
VRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADLLYGGNSHLTTINMSEFKEEHKV
SLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSE
LLSALSADPDTMPEGEALEALLMPELTKQFKPAFLGRTIILPFMPLGAEELARIVDMQIGKIRDRVLATYGTDLRLSDAA
RDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGENGFGIRAEAAGEADEFAVTEEVGVDKV
AASDGATRRMRH*

  Nucleotide sequence: 2679 bp    

>T6CP015549 NZ_CP033023:1447746-1450424 [Agrobacterium fabrum] [TssH]
ATGTCGCATATCGATCTCAATCGCCTCGTTGGAGCGCTTGAGCCAGACCTGCGCGTTACCCTCGAAGCTGCGGCTTCCGT
TGCGGTGCGTATGGGGCACAGGTACGTGGATATCCCGCATTGGCTGCTGGCGGTTGTAGATGCCGGTATCTATGCGGAAA
CATTCGACGAATTAAAAATTCCACTTCCGGTATTGAAGGCTGAAATCGGCCGCAGTCTGGAAGAGGCCATTATCGGCGAC
GGGGAGGCCTTGTCGCTCTCCCAGAACATCCTCACGGCAGCCCGGGAGGCATGGATTCTTGCGTCGCTGGAGGCTGGCCG
TGACCGCGTGACGCTTTGCGATCTCCTGTTGGCGATGGATGAGGAAACCTCACTTCGCTCCTTTGTCCGCTCGGCATTTC
CGTCTCTCAAGGCGATGGATCGCGGTGCGCTTGAGCGTCTTCGCAGCTCGGCCGAGAACGGCGCAGGCGTGGATGTTCCT
TCCGCGCTGACAAGTTCAGGAGAGGCAGGCTCGGCACAGGCCGCCGGCCAGAATGATTTCTTGCGCCTTTACACCCACGA
CATGACCACCGATGCCCGCAACGGCAAGGTCGATCCTGTTATCGGCCGCGATGATGAGTTGCGCCAGCTCGTTGATATTC
TGACCCGCCGCCGACAGAACAATCCTATTCTGGTGGGCGAGGCCGGCGTGGGCAAGACCGCGGTCGCCGAAGCGCTGGCG
TTGGAAATCGCCTCCGGCAACGTTCCGGAGAAACTGCGCAATGTCCGCCTGCTGAACCTCGATATTTCGCTGCTGCAGGC
CGGTGCCGGCGTGAAAGGTGAGTTCGAGCGGCGCCTGCACGGCGTGATCGATGCGGTCAAGCGTTCGGCCGAACCGGTCA
TCCTGTTCATCGATGAGGCCCACGGCCTTGTTGGCGCGGGTGGTGCGGCGGGCCAGGGTGATGCGGCGAATATTCTTAAG
CCCGCACTCGCACGAGGCGAGGTGCGGACCGTCGCGGCAACGACGTGGAGTGAATACAAGAAATATTTCGAGAAGGATGC
GGCGCTGACGCGTCGTTTCCAGCCAGTGCATGTGCGCGAGCCGGACGAGGCGACTGCGATACGGATGTTGCGCGGTGTGG
CGGATACTTTCGTCAGCCATCACAACGTTACCGTTCGTGATGAGGCGATCGTGGCTGCCGTGCAATTATCCGCGCGCTAC
ATGCCCGCTCGGCAATTGCCGGACAAGGCGGTCAGCCTGCTCGATACCGCCGCCGCGGCCGTTTCGCTGGCGCGGCAGAC
GTTGCCAGAGCGGTTACGTGCCATGGAAAGCGAGCGACACCTTCTGTCTGACGAACTGAACTGGCTTCTGCGTGAACCGC
AGGATGAGGACATGCAAAACCGCATCCAGTCGATACGCGACGAGCTTGAACGGCTTGAGGCCGGGATCGATGATCTGCGC
GGCCGTTATGACGCGGAAATGGCTGAACTGGCGGCGCTCAGTGAAGAGCAGCCGGCCGAAACCGGCGCGTCGAATGTTTC
GCACCTGCGGCCTGCCACGGAGATGCGGCCCGCAAATGCCGAAAGACTTGTTCCGACAGTGGTTGATCGTGAAGCGATCG
CCGCCGTCGTCTCGCGATGGACCGGGATTCCGCTCGGCAAACTTCTGGCGGACCAGATCGAAAGCGCCCGCACTCTGGAT
GTGCGCATGCGGCAGCGCGTGGTTGGGCAGGATGCCGCAATTACCCGGATTGCCGATGCCATGCGCACCGCCCGTGCCGG
ATTGTCCGATCCGCGCCGTCCGCCGGCGGTGTTTTTCCTTGTCGGCATGTCCGGAACGGGCAAGACCGAAACGGCGCTGT
CGCTGGCCGATCTTCTCTATGGCGGCAACAGCCATCTGACGACGATCAACATGTCGGAGTTCAAGGAGGAGCACAAGGTT
TCCCTGCTTCTCGGCTCACCGCCTGGCTATGTCGGTTTCGGCGAAGGTGGGGTGCTGACGGAAGCGGTGCGCCGCCGGCC
GTTCGGCGTTCTGCTTCTCGATGAAATCGACAAGGCTCACCCCGGCGTCCAGGATATTTTTTATCAGGTGTTCGACAAGG
GCGTGCTTCGCGATGGCGAAGGCCGCGACGTCGATTTCAAGAACACCACGATCTTCATGACGGCCAATACCGGTTCGGAA
TTGCTGTCGGCGCTTTCCGCCGATCCCGACACTATGCCGGAAGGTGAGGCGCTGGAAGCGCTTCTGATGCCGGAGCTTAC
CAAACAGTTCAAGCCCGCATTCCTCGGGCGCACGATCATCCTGCCCTTCATGCCGCTTGGCGCGGAGGAGCTTGCAAGGA
TCGTGGACATGCAGATTGGCAAGATCAGGGACCGTGTGCTCGCAACATATGGCACCGACCTGAGATTGTCCGATGCGGCG
CGCGATGCCTTGGTGGCGCGCGCCGGTGCAAGTGAAATCGGCGCACGCGCCATCGAAATCATGATCGGCAAGGATCTCCT
GCCGCCTCTTTCCAGCTTTTTCCTCGAGAAGGTCATCGCGGGAGAACGCGTCGGGAAGATCGTTGTCGATTTTGGTGAAA
ACGGGTTCGGCATTCGTGCCGAAGCGGCTGGGGAAGCAGATGAATTCGCCGTAACCGAAGAGGTTGGGGTGGATAAAGTT
GCCGCGTCGGATGGGGCTACCCGACGCATGCGGCATTAA