Detailed information of component protein


Summary

Component ID T6CP015540
Component protein type TssL
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (502 a.a.); Nucleotide sequence (1506 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21325
Coordinate (Strand) 1434718..1436223 (-)
NCBI ID WP_092772435.1
RefSeq NZ_CP033023
Uniprot ID UPI000889BBB4
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.3e-54 75..276
OmpA PF00691.22 4.7e-12 367..464
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-255 MSTENPSSWQDLPTVVEITEESRRRNQNARNMAAILEDIVETDEQARPARGKTATLPVDQLLTGFHFGGEEVPTLVQSAAPLLNLAHLLRFSDAEPDRDQLRRACVEAITRYERDLASARISPERARAAHYVVCATVDDVVLSKPWGVRAGWARSGLVSTFHNDVTGGDRVFDILDHFHQSPGANKDLLLLIYLCLSLAFEGRTRVSSKGALELSRIRDSLYKTLIGQYGTFERELSPHWKGVDARHTPLRTMTA
Transmembrane helix 256-278 LWTLLSLMALAFALGYLFFTLSL
Outside 279-501 NNASDVTFERLAHLPPTETPSVLIANPPPQPPAQVEIPRVVEPPKTVAPRQPSRLEKLMAFLQPEVDKKLVTLADVNGRLRVRINNSGLFTTGSADVSPQFRDLIQRIGGALAAEKFRAVVIGYTDTVPIKTVEFPSNWHLSEARAKAVGDILSQFTGPDAILTEGRADSDPIADNKTEEGRQINRRTEIMVLTNPDEKLSDAGILSPPIENSSGQQPGEAQP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9815 - -


  Protein sequence: 502 a.a.    

>T6CP015540 NZ_CP033023:c1436223-1434718 [Agrobacterium fabrum] [TssL]
MSTENPSSWQDLPTVVEITEESRRRNQNARNMAAILEDIVETDEQARPARGKTATLPVDQLLTGFHFGGEEVPTLVQSAA
PLLNLAHLLRFSDAEPDRDQLRRACVEAITRYERDLASARISPERARAAHYVVCATVDDVVLSKPWGVRAGWARSGLVST
FHNDVTGGDRVFDILDHFHQSPGANKDLLLLIYLCLSLAFEGRTRVSSKGALELSRIRDSLYKTLIGQYGTFERELSPHW
KGVDARHTPLRTMTALWTLLSLMALAFALGYLFFTLSLNNASDVTFERLAHLPPTETPSVLIANPPPQPPAQVEIPRVVE
PPKTVAPRQPSRLEKLMAFLQPEVDKKLVTLADVNGRLRVRINNSGLFTTGSADVSPQFRDLIQRIGGALAAEKFRAVVI
GYTDTVPIKTVEFPSNWHLSEARAKAVGDILSQFTGPDAILTEGRADSDPIADNKTEEGRQINRRTEIMVLTNPDEKLSD
AGILSPPIENSSGQQPGEAQP*

  Nucleotide sequence: 1506 bp    

>T6CP015540 NZ_CP033023:c1436223-1434718 [Agrobacterium fabrum] [TssL]
ATGAGCACGGAAAACCCCTCTTCCTGGCAGGATTTACCGACGGTGGTCGAGATCACCGAGGAAAGCCGCCGGCGCAACCA
GAACGCCCGCAACATGGCGGCGATCCTCGAAGACATCGTCGAGACCGACGAGCAGGCCCGCCCCGCAAGGGGGAAAACGG
CCACCCTGCCGGTCGACCAGCTGTTGACAGGTTTCCACTTCGGCGGAGAGGAGGTACCGACACTTGTGCAATCGGCGGCT
CCCCTTCTCAACCTCGCACATCTGCTGCGCTTCAGCGATGCCGAGCCGGACCGCGACCAGCTTCGCCGCGCCTGCGTTGA
GGCGATCACCCGTTACGAGCGCGATCTCGCTTCCGCCCGCATCAGCCCCGAGCGGGCAAGAGCAGCGCATTACGTCGTCT
GCGCAACAGTGGATGATGTCGTTCTCAGCAAGCCCTGGGGCGTGCGGGCAGGCTGGGCGCGCTCCGGCCTCGTTTCCACC
TTCCACAATGACGTGACCGGTGGCGACCGGGTTTTCGACATTCTCGACCATTTCCACCAGTCGCCCGGCGCCAACAAGGA
TCTGCTGCTGCTGATCTATCTGTGCCTGTCGCTGGCTTTCGAAGGACGTACCCGCGTTTCATCGAAAGGGGCACTGGAGC
TTTCGCGCATCCGCGACAGCCTCTACAAGACGCTGATCGGCCAATATGGCACCTTCGAGCGGGAGCTTTCCCCACATTGG
AAAGGCGTCGATGCCCGTCATACGCCACTGCGGACGATGACCGCGCTGTGGACCCTGCTGTCGCTGATGGCACTCGCCTT
CGCGCTAGGTTATCTCTTCTTCACGCTATCGCTCAACAACGCATCCGATGTCACCTTCGAAAGGCTTGCCCATCTGCCGC
CGACCGAGACGCCGAGCGTGCTGATCGCCAACCCGCCGCCCCAGCCACCGGCGCAAGTCGAAATTCCCAGGGTTGTCGAG
CCGCCGAAGACGGTGGCGCCGAGACAACCCTCCCGGCTTGAAAAGCTGATGGCCTTCCTGCAGCCGGAAGTCGACAAGAA
GCTTGTGACCCTGGCGGATGTGAACGGGCGGCTGCGAGTTCGCATCAACAATTCGGGCCTGTTCACGACAGGCAGCGCCG
ATGTCAGCCCGCAGTTCCGCGACCTCATCCAGCGTATTGGTGGTGCGCTTGCGGCTGAAAAATTCCGCGCCGTCGTCATC
GGTTATACCGACACCGTGCCGATCAAGACGGTGGAGTTTCCATCGAACTGGCACCTTTCCGAGGCGCGCGCCAAGGCGGT
CGGAGACATTCTTTCACAATTCACCGGCCCCGACGCGATCCTGACCGAAGGCCGGGCCGACAGCGACCCGATCGCCGACA
ACAAAACGGAAGAAGGCCGCCAGATAAACCGCAGAACAGAAATCATGGTCCTGACCAATCCCGATGAAAAACTGAGCGAC
GCCGGCATTCTCTCGCCGCCCATAGAGAACAGTTCGGGACAGCAGCCGGGAGAGGCCCAGCCATGA