Detailed information of component protein


Summary

Component ID T6CP015542
Component protein type TssG
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (335 a.a.); Nucleotide sequence (1005 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21340
Coordinate (Strand) 1438760..1439764 (-)
NCBI ID WP_010973759.1
RefSeq NZ_CP033023
Uniprot ID A0A7Y0T3A7_9HYPH, A9CGG2_AGRFC, A0A083ZIC3_RHIRD
KEGG ID atu:Atu4336
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 4e-61 56..309
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-334 MDQQMPTIKDRQAALLSDDPGRFEPTTAFRVAQFVAADDGVVIGAHGGTQPTPLAVSGFNQKRGHAELKSAFAPIVGPLGSLPPAYGELLQREERNRSAALASFFNLFAARFSELFVAATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTTGLAQKAGVAEDTLLRFSGLLASRNRNVSALTSMLCEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVEDMSGGFRVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRLGQSDAPARLGWNSWARVAPAEKDSADAVVTEREGSAISV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9781 - -


  Protein sequence: 335 a.a.    

>T6CP015542 NZ_CP033023:c1439764-1438760 [Agrobacterium fabrum] [TssG]
MDQQMPTIKDRQAALLSDDPGRFEPTTAFRVAQFVAADDGVVIGAHGGTQPTPLAVSGFNQKRGHAELKSAFAPIVGPLG
SLPPAYGELLQREERNRSAALASFFNLFAARFSELFVAATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTTGLAQKAG
VAEDTLLRFSGLLASRNRNVSALTSMLCEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVEDMSGGF
RVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRLGQSDAPARLGWNSWARVAPAEKDSA
DAVVTEREGSAISV*

  Nucleotide sequence: 1005 bp    

>T6CP015542 NZ_CP033023:c1439764-1438760 [Agrobacterium fabrum] [TssG]
ATGGACCAGCAAATGCCAACCATAAAAGACCGGCAGGCCGCGCTTCTCAGCGACGATCCCGGCCGTTTCGAACCCACCAC
CGCGTTTCGTGTTGCCCAATTCGTCGCAGCGGATGACGGGGTCGTCATCGGTGCTCATGGCGGCACACAGCCGACACCGC
TCGCGGTCAGCGGTTTTAATCAAAAGCGCGGCCATGCCGAACTGAAATCCGCCTTCGCCCCGATCGTCGGTCCGCTTGGG
TCGCTGCCGCCGGCCTATGGCGAATTGCTGCAACGGGAAGAACGTAATCGTTCCGCGGCGCTCGCGAGCTTCTTCAATCT
GTTCGCGGCAAGGTTCAGCGAGCTTTTCGTCGCCGCAACGGAGAAATATCGCCTCGCAAGGGGCCTGCGCTGGTCGGCCA
GGGAACAGGACAACGGTTTCCGCAAAACCCTGCTGGCGCTGACGGGGTTCAGGACGACGGGACTGGCACAGAAGGCCGGC
GTTGCCGAAGACACACTTCTGCGTTTCAGCGGGCTGTTGGCCAGCCGCAACCGAAATGTCAGCGCGCTCACCTCCATGCT
GTGCGAGTTCACCGCGCTTCCGGTCACGGTCGAACAGTTTCGGCGGCGCTGGGTGGCTTTGCCGCTTCACGAACAAAGCC
AGCTCGGACAGGCCTCCGGACTGAGGCTGGGGCAGAACACGACGGCAGGAAGCGCTGTCGAAGATATGAGCGGCGGCTTC
CGGGTGGTGATCGGCCCCGTCGGCTATGCCGACTATCTGGCCCTGACGCCCGGATCGAAGCGGCTTGCGGAAATATTCGC
GCTGACGCGCCTGTTCGTTGGAAGCGCGCTGCATTTCGATGTGCAGGTGATCCTGAAAAAGGAGGACATTCCCTTTTGCC
GCCTCGGCCAGTCCGATGCGCCCGCCCGTCTCGGCTGGAACAGCTGGGCCCGCGTGGCACCCGCAGAAAAAGACAGCGCC
GATGCTGTTGTGACCGAGCGCGAAGGCTCGGCTATTTCCGTGTGA