SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015548
Component protein type	TssA
T6SS ID (Type)	T6SS01240 (Type i5)
Strain	Agrobacterium fabrum strain 1D132
Replicon	chromosome
Sequence	Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference	[1] Wu CF, Santos MNM, Cho ST, et al. Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness. Mol Plant Microbe Interact. 2019 Aug;32(8):961-971. doi: 10.1094/MPMI-01-19-0021-R. Epub 2019 Jun 27. PMID: 30830835

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	At1D132_RS21375
Coordinate (Strand)	1446470..1447525 (-)
NCBI ID	WP_092772429.1
RefSeq	NZ_CP033023
Uniprot ID	UPI00088D2241
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	1.8e-22	15..133

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-351	MDTQHVKRDIEFLGNCGDNIRNDSRTREIYYRIKDERNQARAEERAASPQDNLKISSSWDSVSNLGLQIIYSESKDVEILAWLAEASLRLRGFHGLREIYELCGDLFYNHWDSLRSISDDNDEEKFAPFAGLNGIGSEGTLVQPLRLASLIPGGKFGEHSLWDFQLAQRPNESKRREELYRIASEAGVAAMSSHLAAVNTCLSSFDAITAVLSERCGQAAPPSSNIRNTLIEAAAAIRTLGGRDQEPAPVEQTPAIAAGTDESGHSAARTSPASPEGISSRDEAFETLLSVARYFRRTEPHSPISLSIETLVRRGRMDFSELLAELLPETQARNAVLTAAGIKPGGDNNGK

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9809	-	-

Protein sequence: 352 a.a.

						>T6CP015548 NZ_CP033023:c1447525-1446470 [Agrobacterium fabrum] [TssA]
MDTQHVKRDIEFLGNCGDNIRNDSRTREIYYRIKDERNQARAEERAASPQDNLKISSSWDSVSNLGLQIIYSESKDVEIL
AWLAEASLRLRGFHGLREIYELCGDLFYNHWDSLRSISDDNDEEKFAPFAGLNGIGSEGTLVQPLRLASLIPGGKFGEHS
LWDFQLAQRPNESKRREELYRIASEAGVAAMSSHLAAVNTCLSSFDAITAVLSERCGQAAPPSSNIRNTLIEAAAAIRTL
GGRDQEPAPVEQTPAIAAGTDESGHSAARTSPASPEGISSRDEAFETLLSVARYFRRTEPHSPISLSIETLVRRGRMDFS
ELLAELLPETQARNAVLTAAGIKPGGDNNGK*					

Nucleotide sequence: 1056 bp

						>T6CP015548 NZ_CP033023:c1447525-1446470 [Agrobacterium fabrum] [TssA]
TTGGATACACAGCATGTTAAAAGAGATATAGAGTTTTTGGGGAATTGCGGAGATAATATCCGCAACGATTCAAGAACGCG
TGAAATATACTATAGAATTAAGGACGAAAGAAACCAGGCACGCGCAGAAGAGCGGGCCGCCTCCCCTCAGGATAACCTGA
AGATCTCCAGTAGCTGGGACAGTGTCAGCAATCTTGGATTGCAGATTATATATTCCGAAAGCAAGGATGTTGAAATATTG
GCATGGCTTGCGGAAGCAAGCCTGCGACTTCGCGGCTTCCATGGACTGCGCGAAATCTACGAGCTTTGTGGTGATCTTTT
TTACAACCACTGGGACTCATTGCGCTCGATCAGCGACGATAATGACGAAGAAAAATTTGCACCTTTTGCGGGATTGAATG
GCATTGGCAGCGAGGGAACACTTGTTCAGCCACTCAGGCTGGCATCGCTGATCCCCGGAGGCAAATTCGGAGAACACAGT
CTCTGGGATTTCCAGCTGGCGCAGCGGCCGAACGAGAGCAAACGCCGCGAAGAACTGTACCGGATAGCCTCCGAGGCCGG
TGTTGCCGCCATGTCTTCCCATCTGGCAGCGGTGAATACCTGTCTCTCCTCGTTTGACGCCATTACCGCCGTTCTTTCCG
AACGTTGCGGCCAGGCCGCCCCCCCGAGCTCCAATATCCGCAACACGCTTATCGAAGCGGCCGCGGCAATTCGCACGCTG
GGTGGGCGCGACCAGGAACCGGCACCGGTCGAACAGACGCCGGCCATTGCTGCGGGCACCGATGAAAGCGGGCATTCGGC
CGCGCGGACATCCCCGGCATCCCCGGAAGGCATATCTTCGCGCGATGAGGCGTTTGAAACTCTTCTTTCGGTTGCGCGTT
ACTTTCGCCGAACCGAACCGCATTCACCGATCTCGCTCTCCATCGAAACGCTGGTTCGCAGGGGGCGCATGGATTTCTCG
GAACTGCTGGCCGAGCTTCTGCCGGAAACGCAGGCCCGAAACGCCGTTCTGACGGCCGCCGGCATCAAACCCGGCGGAGA
CAATAACGGGAAATAA					