Detailed information of component protein


Summary

Component ID T6CP015552
Component protein type TssI
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (817 a.a.); Nucleotide sequence (2451 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21400
Coordinate (Strand) 1451981..1454431 (+)
NCBI ID WP_121651778.1
RefSeq NZ_CP033023
Uniprot ID UPI000EF52E60
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.2e-73 36..346
Phage_base_V PF04717.14 3.2e-12 400..467
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-816 MNDQPSVSDFVQASRVLKVSSPLGEDQLLPERLSVEEGVSQLFEIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGGGVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWIDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQHYSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQAIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAGTALAGSGSGVGSDASGLFPLPGIMNTIIGAFQSTSVGVAKAEQVGVSKVTNIGQTEVRQVGKQQNLTIGKEQFVEIGTGQYTRVGEKITINVGKLYNLVSEEKYHGEAKVWEIFADDEIRLSTPGGYISLTKSGIKLFALKIDIEGNQINFKKGGPGESGSCLKSMSKNSTPFVRI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9940 - -


  Protein sequence: 817 a.a.    

>T6CP015552 NZ_CP033023:1451981-1454431 [Agrobacterium fabrum] [TssI]
MNDQPSVSDFVQASRVLKVSSPLGEDQLLPERLSVEEGVSQLFEIRLTVRAKKEAVKPEELIGRLVDVSIEISQGDGDGG
GVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWIDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQH
YSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVS
GQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQAIEADHDRVFGSSTTRILEAGRR
FTPFEVAHPEHAYEEHVIVRASHSIVDLSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH
PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLP
ANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSV
NTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAG
TALAGSGSGVGSDASGLFPLPGIMNTIIGAFQSTSVGVAKAEQVGVSKVTNIGQTEVRQVGKQQNLTIGKEQFVEIGTGQ
YTRVGEKITINVGKLYNLVSEEKYHGEAKVWEIFADDEIRLSTPGGYISLTKSGIKLFALKIDIEGNQINFKKGGPGESG
SCLKSMSKNSTPFVRI*

  Nucleotide sequence: 2451 bp    

>T6CP015552 NZ_CP033023:1451981-1454431 [Agrobacterium fabrum] [TssI]
ATGAACGACCAGCCTTCGGTTTCTGATTTCGTTCAGGCGAGCCGTGTTCTGAAAGTGTCTTCGCCCTTGGGCGAGGACCA
GCTTCTGCCGGAACGCCTGTCCGTCGAGGAGGGCGTGTCGCAGCTCTTCGAGATCCGCCTGACCGTGCGAGCCAAGAAGG
AAGCGGTGAAGCCCGAGGAACTGATCGGACGGCTGGTCGATGTCTCGATCGAGATAAGCCAGGGCGATGGTGATGGCGGC
GGCGTTCGCCGCCCCTTCAACGGCCTGGTGACGGAATTGCATGAAGGGCCGCCGATTACCCGTGGCATGCGCTCCTATGC
GCTGACCATCCGGCCGCAGATGTGGCTGCTGTCGCGGCGTTCCGACTGCCGCATCTGGATCGACAAGACGGCAGTGGAGA
TCGTCGAGACGCTGTTTTCCGAACACGGCATTCCCGCCCCCGATACATCGGGCATCATTTCGCCACCGCCTGCGCAGCAC
TACAGCGTTCAGTTTAACGAGACGGACCTCGATTATCTGACCCGCCGTTTCGAGGAGGACGGCCTGTTTTACTGGTTTAG
CCACGAGGACGGGTCCCACAAGCTGCATGTGGCCGATAGCGCCAGCGGCTGGCTCGGACCATCACCGGCCGCACAGGGCG
AGGGAACGGTGCGTCTGGCGCAGGGCTCGTCGGACCGTAACCACATCAATGACTGGGCGCGGCGGTTCTCCTATGTCTCC
GGCCAGCGGGCGGGTGCGGACTGGAACTTCGAGACGCCGGGCATGGTGCCGGGCACGATGACGCCGTCGCTGGTGCAGAT
GCCGGATGCGACAAAGCGCGAGCTTTACGAATATCCAGCCCGCATCAAGACAGTGGAAGAAGCGGAACGGGCGCAGAAAC
TGCGGACCCAGGCAATTGAGGCCGATCATGACCGGGTGTTCGGCTCATCGACCACGCGTATTCTGGAAGCGGGCCGCCGC
TTTACGCCTTTCGAGGTTGCCCATCCCGAGCATGCCTACGAGGAACATGTGATCGTGAGGGCAAGCCACAGCATCGTTGA
TCTCTCCTATGAGACAAACAGCAACGAACCGGAGTACCGCAATCACTTCGAGGCAATTCCCGCCCGCGTGCCGCTGACGC
CGCACCGGTCAACCAAACGGCCGCGCATCGAAGGCACGCAGGTGGCGATCGTCGCCGGCCCCGAAGGCGAGGAAATCCAT
CCGGATCAATATGGCCGCATCAAGCTGTGGTTCCCGTGGGACCGCAAGGCGAAGAAGGATGGCACGGATACGTGCTGGGT
GCGGGTCAGCCAGGCATGGGGTGGCGGCACTTGGGGTGCGCAGGTCATTCCGCGCATCGGCATGGAGGTGATGGTTGCTT
TTGTCGATGGCGATCCTGATAAGCCGCTGGTTATCGGCGTGGTCAACAATCCCGCCAATTCCGTGCCTTACGACCTGCCG
GCCAACAAGACGCGTATGGTGCTGCGCTCCAACAGTCACAAGGGTGACGGTTTCAACGAAATCACTTTCGAAGATGAAGC
CGGCAAGGAGAACCAGTTCTTCCACGCCCAGAAGGACCAGACGACGCGGGTCTTGAACGACCGGACCAAACGCATCGACC
GGCACGAGGTCGCCTCGGTCGGCGGCAACCGCGCCGTCGAGGTTTCCGGCAACCAGAAACACGAGATCGGTGGTTCGGTG
AATACTGTCGTCGGCGGAACGGGACCGATGGCGATGATGGCGATGGCAGGCGTGCAGGCGCTTTCAGGACAGACGGCTGG
CCTGCTTTCACAGGCCGCCCAGATTGCCGGCGGTGGTGGTCCTGGTGTCGCAGCCTTTGCCACCACGCTTGCCTCATCCG
CACTCGGATTTCTTGGTGCAGGCGGACTTTCCTCGCGCGAGGGCGTTGTCTCCGGTCCAAGCCCGCGGGCGGATGCGGGT
ACGGCACTTGCCGGCTCCGGCTCGGGCGTCGGTTCCGATGCCTCGGGCCTCTTTCCGCTGCCGGGCATCATGAACACGAT
CATCGGGGCGTTTCAGTCCACATCCGTTGGAGTGGCAAAAGCCGAGCAGGTCGGGGTCAGCAAGGTCACGAATATCGGGC
AGACGGAAGTCCGACAGGTTGGAAAACAGCAGAACCTGACCATCGGCAAAGAGCAATTCGTCGAGATCGGTACCGGCCAA
TATACGCGTGTCGGTGAGAAGATCACCATCAATGTCGGCAAGCTCTACAATCTCGTCTCCGAAGAGAAATATCATGGCGA
GGCGAAGGTCTGGGAGATATTCGCCGACGACGAAATTCGTCTTTCGACTCCCGGCGGATACATCTCCCTGACTAAAAGCG
GCATCAAGCTCTTTGCCCTGAAGATCGATATCGAAGGCAACCAGATCAACTTCAAGAAAGGTGGCCCAGGTGAAAGTGGC
TCCTGCTTGAAGTCGATGTCGAAGAATTCCACACCGTTTGTCAGGATTTGA