Detailed information of component protein


Summary

Component ID T6CP015543
Component protein type TssF
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (594 a.a.); Nucleotide sequence (1782 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21345
Coordinate (Strand) 1439774..1441555 (-)
NCBI ID WP_010973760.1
RefSeq NZ_CP033023
Uniprot ID A0A7Y0T2I9_9HYPH, A9CGG3_AGRFC, A0A083ZIC4_RHIRD
KEGG ID atu:Atu4337
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4e-201 1..590
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-593 MADGFLEKYNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELSDSLLETLYPHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTTQEVQIAPLQIAAATLAGQPIDAPFSASFAGTASCLRLSLRSTAPRGGTFPEMGLTKLQVFLSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAMLPYPANSFDGYRLLTEFFALPQKFLFLDIDGLHRWSGGDCELYIYLDAADAQLERMVSVKDFVLNASPVINLFKQSCEPLSLDGTRTEYRLLPDARRQRTREIYAVEDVQLTSRSGQSEKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEKRGPLGPLDVVASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLISHLLLNHLSLTDSGGAPLKDILSLYSFRDSPETRQLVEAISKVEAQNSHARIGATMVPGTDITVEFDPALIARPAAFVFAGVLNHFFGLYTSINSFTRLTATMRGHSKPIARWPARAADRPLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9844 - -


  Protein sequence: 594 a.a.    

>T6CP015543 NZ_CP033023:c1441555-1439774 [Agrobacterium fabrum] [TssF]
MADGFLEKYNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELSDSLLETLY
PHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTTQEVQIAPLQIAAATLAGQPIDAPFSASFAGTA
SCLRLSLRSTAPRGGTFPEMGLTKLQVFLSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAM
LPYPANSFDGYRLLTEFFALPQKFLFLDIDGLHRWSGGDCELYIYLDAADAQLERMVSVKDFVLNASPVINLFKQSCEPL
SLDGTRTEYRLLPDARRQRTREIYAVEDVQLTSRSGQSEKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEK
RGPLGPLDVVASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLISHLLLNHLSL
TDSGGAPLKDILSLYSFRDSPETRQLVEAISKVEAQNSHARIGATMVPGTDITVEFDPALIARPAAFVFAGVLNHFFGLY
TSINSFTRLTATMRGHSKPIARWPARAADRPLL*

  Nucleotide sequence: 1782 bp    

>T6CP015543 NZ_CP033023:c1441555-1439774 [Agrobacterium fabrum] [TssF]
ATGGCTGACGGCTTCCTCGAAAAATACAATGACGAGCTTTTTGCGCTGCGAAAACGCGCTTCGCGCTTTGCGGCGGCGTT
TCCGAAGATCGCTGGCAGGCTGCGCATGACTGGTGATGTCGCCGACGATCCGCATGTCGAGCGGCTGATCCAGAGCTTTG
CCTATTCCGCCGCCCGCGTGCGCCAAAAGCTGGACGACGAATTTCCCGAATTGTCAGACAGCCTGCTGGAAACGCTCTAT
CCGCATTATCTTGCGCCGATCCCTTCGATGAGCGTCGTGCAATTCGCTCCGAGTCCGGCGCTGGCAACCGTACAGACGCT
TGCCCGTCACAGCGAAATCCTCGCCGAACCCGTGGGCGGCGAAAGCTGCCGTTTCCGCACCACGCAGGAGGTGCAGATCG
CGCCGCTGCAGATCGCGGCAGCGACGCTTGCCGGCCAGCCGATCGACGCGCCTTTTTCGGCATCCTTTGCCGGCACTGCC
AGTTGCCTGCGGCTTTCGCTGCGCAGCACGGCGCCGCGCGGCGGCACATTCCCGGAAATGGGACTGACGAAACTCCAGGT
CTTCCTGTCCGCTGCATGGCAGCAGGCAACGGCGCTTTACGAGCTTTTGACCAACCATTGCGTCGGCATGGCGCTTGCCC
GTCATTCCGAGGACAAGGAAGCCATCTTCCTGCCGGCCGGCAATCTCAGACCTTCCGGGTTCACTCGCGATCAGGCCATG
TTGCCCTATCCGGCCAACAGCTTTGACGGATACAGGCTTCTCACCGAATTCTTCGCGCTGCCGCAGAAGTTTCTCTTTCT
CGATATTGACGGGCTGCACAGATGGAGCGGCGGTGATTGCGAGCTTTATATCTACCTGGATGCCGCCGATGCGCAGCTTG
AGCGCATGGTGTCGGTCAAGGATTTCGTGCTGAACGCGTCTCCGGTCATCAACCTCTTCAAGCAAAGCTGCGAACCGCTC
AGCCTAGATGGAACCCGGACCGAATACCGCCTGCTGCCGGATGCACGCCGCCAGCGGACCCGCGAGATATACGCGGTCGA
AGACGTCCAGCTGACCAGCCGTTCCGGGCAGAGCGAGAAAACCTCTCCCTTCTTCGGCCGCACCCAACGCAACAATGGTG
CGAATGTGTTCTGGCAGATCCAGCGCCGGTTCGACGATGATGGCTCCTCCGATACCGACATCGCCTTCGTGGATGAAAAG
CGCGGACCGCTGGGGCCGCTCGACGTGGTAGCGAGCATCGACACGCTCTGCATCAACCGCGAGCTGCCGAGCCAGCTTCC
GTTTGGTGGTGGGCACCCCTTCCTGCAACTTTCGACCGGCAATGAAGCGGTGAAATCGGTCCATGCGCTGATGCCGCCGA
CGGCGGCGATCCGCGTCAACGAACGCTCGGCGCGCGAGTGGCGGCTGATATCGCATCTTCTCCTCAACCATCTTTCCCTC
ACCGATAGCGGCGGCGCTCCGCTGAAAGATATTCTGTCGCTTTATTCCTTCAGAGACAGCCCGGAAACCCGGCAGCTCGT
GGAGGCGATCAGCAAGGTCGAAGCCCAGAATTCCCACGCCCGCATCGGCGCGACGATGGTGCCCGGCACCGACATAACGG
TGGAGTTCGATCCTGCGCTGATCGCACGGCCTGCGGCCTTTGTATTCGCCGGCGTCCTCAACCATTTCTTCGGGCTTTAC
ACCTCGATCAACAGCTTTACGCGGCTGACGGCGACGATGCGTGGCCATTCCAAACCAATTGCCCGCTGGCCGGCCCGCGC
CGCTGACCGGCCGTTGCTTTAG