Detailed information of component protein


Summary

Component ID T6CP015546
Component protein type TssC
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) At1D132_RS21365
Coordinate (Strand) 1444320..1445801 (-)
NCBI ID WP_006315895.1
RefSeq NZ_CP033023
Uniprot ID A0A7Y0XMB9_9HYPH, A9CGG5_AGRFC, A0A7I0RLS1_9HYPH, A0A083ZIC8_RHIRD
KEGG ID atu:Atu4341
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.3e-134 65..369
VipB_2 PF18945.2 2.7e-46 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MSAESLLKSEAQATTAENQGLLSKVVSATRQTEPDRAQNLLRTLTDQALKGTVKYDRNLTVTLNHAIAELDRTISEQLAAIMQAPEFAKLEGTWRGLNYLVKNSETSVNLKIRVMNAGKRELARDLEKAVEFDQSRLFKAIYEDEFGTPGGEPLGAIIGDYEFGNSFDDVQLLQGVSSIAAAAFAPFISAASPHMFGFEDYRDLARPRDLEKIFDTVEYAKWRSFRESDDSRFVTLALPRVLARMPYGPKTNPVDDFAYDETRGAVNGDLQHDEYCWMNAAYVMGTKLTEAFAKSGWCTAIRGAENGGRVENLPMHVFSSDDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDKPEATANAAVSARLPYIMATSRFAHYLKVMGRDKIGSFMEASDCEVWLNRWIANYVNANDEAGEESRAKYPLRDAKVTVQEVPGKPGAYNAVAWMRPWLQMEELTTSLRMVARIPSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9866 - -


  Protein sequence: 494 a.a.    

>T6CP015546 NZ_CP033023:c1445801-1444320 [Agrobacterium fabrum] [TssC]
MSAESLLKSEAQATTAENQGLLSKVVSATRQTEPDRAQNLLRTLTDQALKGTVKYDRNLTVTLNHAIAELDRTISEQLAA
IMQAPEFAKLEGTWRGLNYLVKNSETSVNLKIRVMNAGKRELARDLEKAVEFDQSRLFKAIYEDEFGTPGGEPLGAIIGD
YEFGNSFDDVQLLQGVSSIAAAAFAPFISAASPHMFGFEDYRDLARPRDLEKIFDTVEYAKWRSFRESDDSRFVTLALPR
VLARMPYGPKTNPVDDFAYDETRGAVNGDLQHDEYCWMNAAYVMGTKLTEAFAKSGWCTAIRGAENGGRVENLPMHVFSS
DDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDKPEATANAAVSARLPYIMATSRFAH
YLKVMGRDKIGSFMEASDCEVWLNRWIANYVNANDEAGEESRAKYPLRDAKVTVQEVPGKPGAYNAVAWMRPWLQMEELT
TSLRMVARIPSKN*

  Nucleotide sequence: 1482 bp    

>T6CP015546 NZ_CP033023:c1445801-1444320 [Agrobacterium fabrum] [TssC]
ATGAGCGCTGAAAGCCTGCTGAAAAGCGAAGCACAGGCAACGACCGCCGAAAATCAGGGACTGCTGTCCAAGGTGGTTTC
CGCAACCCGCCAGACCGAACCGGATCGCGCGCAGAACCTCTTGCGCACGCTGACCGATCAGGCCCTGAAGGGAACGGTCA
AATATGACCGCAACCTCACGGTCACCCTCAATCACGCGATCGCCGAGCTGGACCGGACGATTTCCGAGCAGCTCGCTGCC
ATCATGCAGGCGCCGGAATTCGCCAAGCTGGAAGGCACCTGGCGCGGGCTCAACTATCTCGTCAAAAATTCCGAGACGAG
CGTGAACCTCAAGATCCGTGTCATGAACGCCGGCAAGCGTGAACTGGCGCGCGATCTGGAAAAAGCCGTCGAATTCGATC
AGTCCCGCCTCTTCAAGGCGATCTACGAAGACGAATTCGGCACGCCTGGCGGCGAACCGCTCGGCGCCATCATCGGTGAT
TACGAATTCGGCAATTCCTTCGATGACGTACAGCTGCTGCAGGGCGTCTCATCGATCGCGGCGGCGGCTTTCGCGCCGTT
CATCTCGGCCGCCAGCCCGCACATGTTCGGTTTCGAGGACTATCGCGACCTCGCCCGTCCGCGTGATCTGGAGAAAATTT
TCGATACGGTGGAATATGCCAAGTGGCGCAGCTTCCGCGAAAGCGACGATTCCCGTTTCGTTACGCTCGCCTTGCCGCGT
GTGCTGGCCCGCATGCCCTATGGTCCAAAGACCAACCCCGTCGATGATTTCGCCTATGACGAAACCAGGGGCGCGGTGAA
TGGCGATCTGCAGCATGACGAATATTGCTGGATGAACGCCGCCTACGTCATGGGCACCAAGCTAACCGAGGCTTTTGCAA
AGAGCGGCTGGTGCACGGCGATCCGCGGTGCGGAAAATGGCGGCCGGGTGGAAAACCTGCCCATGCACGTCTTCTCCAGC
GATGACGGCGATCTGGACCTGAAATGCCCGACCGAAGTGGGCATCACCGACCGCCGCGATGCGGAACTCGGCAAGCTCGG
CTTCCTGCCGCTCTGCCACTACAAGAACACGGATTATGCGGTGTTCTTCGGTGCCCAGACCGCACACAAACCGAAGCTTT
ACGACAAGCCGGAAGCTACGGCCAACGCCGCCGTTTCCGCCCGCCTGCCCTATATCATGGCGACCTCGCGCTTCGCGCAT
TATCTCAAGGTGATGGGCCGCGACAAGATCGGCTCCTTCATGGAAGCGTCCGACTGCGAAGTCTGGCTCAACCGCTGGAT
CGCCAACTACGTCAACGCCAATGACGAAGCGGGCGAAGAAAGCCGGGCGAAGTATCCACTGCGCGATGCCAAGGTGACCG
TGCAGGAAGTGCCCGGCAAACCCGGCGCCTACAACGCGGTCGCATGGATGCGGCCCTGGTTGCAGATGGAAGAACTGACG
ACCTCGCTGCGCATGGTCGCCCGTATTCCGTCCAAGAACTGA