Detailed information of component protein


Summary

Component ID T6CP015551
Component protein type Tae4
T6SS ID (Type) T6SS01240 experimental (Type i5)
Strain Agrobacterium fabrum strain 1D132
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) At1D132_RS21395
Coordinate (Strand) 1451466..1451966 (+)
NCBI ID WP_006315890.1
RefSeq NZ_CP033023
Uniprot ID A0A3G2DBK7_9HYPH, Q7CUP8_AGRFC, A0A7I0RMS3_9HYPH, A0A083ZID4_RHIRD
KEGG ID atu:Atu4347
PDB ID 6IJF

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Tae4 PF14113.8 7.8e-19 43..158

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-166 MRVNFDTLYSNYPSSDPSHPNYLSQRDLFTEIGWESFIGNPNYHNTCAIRVSIAFVKSGINIVPSSHRIQKGPYAGKGIEVNMRRLATLMKRTSYLGEPDPYTPATARNGIGARNGVVAFNNIPGYTGGGHIDLVRGGSEATQCASACYYNSETIWFWPLQASRGS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9829 - -



  Protein sequence: 167 a.a.    

>T6CP015551 NZ_CP033023:1451466-1451966 [Agrobacterium fabrum] [Tae4]
MRVNFDTLYSNYPSSDPSHPNYLSQRDLFTEIGWESFIGNPNYHNTCAIRVSIAFVKSGINIVPSSHRIQKGPYAGKGIE
VNMRRLATLMKRTSYLGEPDPYTPATARNGIGARNGVVAFNNIPGYTGGGHIDLVRGGSEATQCASACYYNSETIWFWPL
QASRGS*

  Nucleotide sequence: 501 bp    

>T6CP015551 NZ_CP033023:1451466-1451966 [Agrobacterium fabrum] [Tae4]
ATGCGCGTTAACTTTGACACCCTCTATAGCAATTATCCGAGCAGCGATCCGTCGCATCCGAATTATCTCAGCCAGCGTGA
TCTGTTCACGGAAATCGGCTGGGAGAGCTTCATCGGCAATCCGAACTATCATAATACCTGCGCCATCCGCGTCAGCATCG
CTTTCGTGAAGTCGGGCATCAACATCGTGCCCTCTTCGCACCGCATCCAGAAGGGCCCCTATGCCGGAAAGGGCATCGAG
GTGAACATGCGCCGCCTTGCCACCCTGATGAAGCGGACGAGCTATCTCGGCGAGCCCGATCCTTACACGCCCGCCACCGC
CCGCAACGGCATCGGCGCGCGCAACGGTGTCGTGGCCTTCAACAATATTCCCGGCTACACCGGTGGCGGTCATATCGATC
TCGTGCGCGGCGGGTCGGAAGCCACCCAATGCGCGTCGGCCTGCTACTACAATTCGGAAACGATCTGGTTCTGGCCGCTG
CAGGCCAGCCGCGGGTCCTGA