Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00381 experimental
T6SS type Type i1
Strain Xenorhabdus bovienii SS-2004
Replicon (RefSeq) chromosome (NC_013892)
Location 268621..293062
Function anti-bacterial
Comment The hcp1 mutant was unable to kill the prey on solid media, and this defect can be complemented by introducing hcp1 on a plasmid. T6SS-1 and T6SS-2 facilitated biofilm formation in XBJ.
References
[1] Kochanowsky RM, Bradshaw C, Forlastro I, Stock SP. et al (2020) Xenorhabdus bovienii strain jolietti uses a type 6 secretion system to kill closely related Xenorhabdus strains.. FEMS Microbiol Ecol. 96(8). [PudMed:32558899]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentFHATssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number12111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
XBJ1_RS01140 266234..267904 - 1671 WP_012986872.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein
T6CP008854 TssD XBJ1_RS01145 268621..269139 - 519 WP_012986874.1 Hcp family type VI secretion system effector
T6CP003901 TssB XBJ1_RS01150 (tssB) 270061..270558 + 498 WP_012986876.1 type VI secretion system contractile sheath small subunit
T6CP003902 TssC XBJ1_RS01155 (tssC) 270579..272057 + 1479 WP_012986877.1 type VI secretion system contractile sheath large subunit
T6CP008855 TssE XBJ1_RS01160 (tssE) 272060..272500 + 441 WP_012986878.1 type VI secretion system baseplate subunit TssE
T6CP003903 TssF XBJ1_RS01165 (tssF) 272501..274333 + 1833 WP_012986879.1 type VI secretion system baseplate subunit TssF
T6CP003904 TssG XBJ1_RS01170 (tssG) 274297..275349 + 1053 WP_012986880.1 type VI secretion system baseplate subunit TssG
T6CP011808 FHA XBJ1_RS01175 (tagH) 275355..276650 + 1296 WP_012986881.1 type VI secretion system-associated FHA domain protein TagH
T6CP003905 TssJ XBJ1_RS01180 (tssJ) 276634..277188 + 555 WP_012986882.1 type VI secretion system lipoprotein TssJ
T6CP003906 TssK XBJ1_RS01185 (tssK) 277191..278543 + 1353 WP_012986883.1 type VI secretion system baseplate subunit TssK
T6CP003907 TssL XBJ1_RS01190 (icmH) 278576..279313 + 738 WP_173346404.1 type IVB secretion system protein IcmH/DotU
T6CP003908 TssH XBJ1_RS01195 (tssH) 279323..282037 + 2715 WP_012986885.1 type VI secretion system ATPase TssH
XBJ1_RS01200 282037..282831 + 795 WP_012986886.1 Fis family transcriptional regulator
XBJ1_RS01205 (tagO) 282828..283493 + 666 WP_012986887.1 type VI secretion system-associated protein TagO
T6CP009380 TssA XBJ1_RS01210 (tssA) 283499..284935 + 1437 WP_012986888.1 type VI secretion system protein TssA
T6CP003909 TssM XBJ1_RS01215 (tssM) 284932..288501 + 3570 WP_012986889.1 type VI secretion system membrane subunit TssM
T6CP008856 TssA XBJ1_RS01220 288584..289975 + 1392 WP_012986890.1 type VI secretion system ImpA family N-terminal domain-containing protein
T6CP003910 TssI XBJ1_RS01225 (tssI) 289991..293062 + 3072 WP_012986891.1 type VI secretion system tip protein VgrG
XBJ1_RS18935 293056..293421 + 366 WP_012986892.1 hypothetical protein
XBJ1_RS01240 293690..294145 + 456 WP_012986893.1 DUF1795 domain-containing protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector