Detailed information of component protein


Summary

Component ID T6CP003910
Component protein type TssI
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (1024 a.a.); Nucleotide sequence (3072 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01225
Coordinate (Strand) 289991..293062 (+)
NCBI ID WP_012986891.1
RefSeq NC_013892
Uniprot ID UPI0001C65E0C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.1e-85 146..444
Phage_base_V PF04717.14 5.8e-15 501..568
Phage_lysozyme PF00959.21 8.9e-13 898..1009
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1023 MSMKKNMAKLKKGRALIQQGQQAAQLAKHVTGKLGGGLGGAAAGTAGLIPGGGFGGGIGGGSAGTGAAGLIPGGGFGGGLGGAGGGAGQGLAARAASGQSGAAKALQKAGQLLGGGGGMAPSGLQFTLTAGGLPPETFVVTDFALTEGFSRPFSLHVGLASADPAIDFPAVLDRSATLTILQEGVEQRSITGIVARFEQGNTGLHQTTYQMSLYPDLWRTTLRQNSRIFQQLDIAAILTTLLKEHGIRDVVFSLRHPHPAREFCVQYQESDFAFLQRLTAEEGIFYFFECGNGRNTLVFADDAGSVPPGIVLAYQPGEGSTTGTPSVGSFTCSAQVRPAQVQLKDYTFKNPAWPAEFSQQMKEDTLQQMYYEHYDYPGRFKDEAHGQAFTRYRLEALRSDAVTGQASGQAIAVQPGKLFTLFNHPREDLNQPWQVVGASHTGSQPQARETASSDSGTTLHSQFSFIRHNQHWRPAPLPKPTIDGPQIAKVVGPAGEEIFCDQYGRIRLQFPWDRYGKSDDQSSCWIRVSQPWAGQGWGMLAIPRIGQEVVVDFLHGDPDQPIVTGRTYHASNIPPGALPGSKTQMAFRSKTHKGEGYNELLFEDAKGSERLALHAQKDMHTTVKDNQSLVVEAGDRTLTVQTGDEHKTVKQGNLTETICQTRSTEANVIQVKAKAGKAGLGTQLYQAEDNITLQVGKGSIEMTPEHIRVAFGSSVILLNSSGVFVDGPAIGLNNGSAGAGLPPAAADGGDSASESGSLLPAAVMAAGLGPMGMAALGSMGLISSASAATPASAPRPMPTPADGAGRQAAPADSQATPASAPRSMPVPVNGAGRQAVPAGSQVAAPSAPPVSATNLTTSTKKTMGQDGLDLLKGIESLRLKPYDDQTGKTVTKWTKGATIGYGKLIEKKDWDTYKDGITEDEAEELFKKTLAPFEKTVNDGITKEINQNQFDALTMFAYNIGAKGFNDSSVLKLVNDENAKTDYDTLDDAWKAWNKSQGKVNQGVINRRAAELKIYNEGVYERW


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
TAT(Tat/SPI) 0.3952 pos: 55-56. GFG-GG. MSMKKNMAKLKKGRALIQQGQQAAQLAKHVTGKLGGGLGGAAAGTAGLIPGGGFG


  Protein sequence: 1024 a.a.    

>T6CP003910 NC_013892:289991-293062 [Xenorhabdus bovienii SS-2004] [TssI]
MSMKKNMAKLKKGRALIQQGQQAAQLAKHVTGKLGGGLGGAAAGTAGLIPGGGFGGGIGGGSAGTGAAGLIPGGGFGGGL
GGAGGGAGQGLAARAASGQSGAAKALQKAGQLLGGGGGMAPSGLQFTLTAGGLPPETFVVTDFALTEGFSRPFSLHVGLA
SADPAIDFPAVLDRSATLTILQEGVEQRSITGIVARFEQGNTGLHQTTYQMSLYPDLWRTTLRQNSRIFQQLDIAAILTT
LLKEHGIRDVVFSLRHPHPAREFCVQYQESDFAFLQRLTAEEGIFYFFECGNGRNTLVFADDAGSVPPGIVLAYQPGEGS
TTGTPSVGSFTCSAQVRPAQVQLKDYTFKNPAWPAEFSQQMKEDTLQQMYYEHYDYPGRFKDEAHGQAFTRYRLEALRSD
AVTGQASGQAIAVQPGKLFTLFNHPREDLNQPWQVVGASHTGSQPQARETASSDSGTTLHSQFSFIRHNQHWRPAPLPKP
TIDGPQIAKVVGPAGEEIFCDQYGRIRLQFPWDRYGKSDDQSSCWIRVSQPWAGQGWGMLAIPRIGQEVVVDFLHGDPDQ
PIVTGRTYHASNIPPGALPGSKTQMAFRSKTHKGEGYNELLFEDAKGSERLALHAQKDMHTTVKDNQSLVVEAGDRTLTV
QTGDEHKTVKQGNLTETICQTRSTEANVIQVKAKAGKAGLGTQLYQAEDNITLQVGKGSIEMTPEHIRVAFGSSVILLNS
SGVFVDGPAIGLNNGSAGAGLPPAAADGGDSASESGSLLPAAVMAAGLGPMGMAALGSMGLISSASAATPASAPRPMPTP
ADGAGRQAAPADSQATPASAPRSMPVPVNGAGRQAVPAGSQVAAPSAPPVSATNLTTSTKKTMGQDGLDLLKGIESLRLK
PYDDQTGKTVTKWTKGATIGYGKLIEKKDWDTYKDGITEDEAEELFKKTLAPFEKTVNDGITKEINQNQFDALTMFAYNI
GAKGFNDSSVLKLVNDENAKTDYDTLDDAWKAWNKSQGKVNQGVINRRAAELKIYNEGVYERW*

  Nucleotide sequence: 3072 bp    

>T6CP003910 NC_013892:289991-293062 [Xenorhabdus bovienii SS-2004] [TssI]
ATGTCGATGAAAAAGAATATGGCAAAACTGAAGAAAGGGCGGGCGCTGATCCAGCAGGGACAGCAGGCCGCCCAGCTGGC
AAAACACGTCACTGGTAAGCTGGGGGGCGGCCTTGGCGGCGCAGCCGCAGGCACCGCCGGCTTAATTCCGGGCGGCGGCT
TTGGCGGGGGTATCGGGGGCGGCTCAGCAGGCACCGGCGCGGCGGGCTTAATCCCGGGCGGTGGCTTTGGCGGCGGATTG
GGTGGTGCCGGGGGGGGAGCCGGGCAGGGACTGGCCGCGCGGGCGGCGAGTGGTCAGAGCGGGGCGGCCAAGGCGCTGCA
AAAAGCCGGCCAGTTATTGGGCGGCGGGGGGGGCATGGCCCCGAGCGGGCTGCAGTTTACCCTGACGGCGGGCGGCCTGC
CGCCGGAAACCTTTGTCGTGACGGACTTCGCCCTGACGGAAGGCTTTTCCCGGCCGTTCAGCCTGCATGTCGGGCTGGCG
AGTGCCGACCCGGCGATTGACTTTCCGGCGGTGCTCGACCGCAGCGCGACCCTGACCATTCTGCAGGAGGGGGTGGAGCA
GCGCAGTATCACCGGGATAGTGGCGCGTTTCGAGCAGGGCAACACCGGCTTGCACCAGACCACCTACCAGATGAGCCTCT
ACCCGGATTTGTGGCGCACCACCCTGCGGCAGAACTCGCGTATCTTCCAGCAGCTGGACATCGCCGCTATCCTCACCACG
CTTTTGAAAGAGCACGGTATCCGCGACGTGGTGTTCAGCCTGCGCCATCCGCATCCGGCGCGGGAATTCTGCGTGCAATA
TCAGGAAAGCGACTTTGCCTTCCTCCAGCGGCTGACCGCGGAAGAGGGCATCTTTTATTTCTTCGAATGCGGTAACGGCC
GTAACACGCTGGTGTTTGCCGATGACGCCGGCTCCGTGCCGCCGGGCATTGTGCTGGCGTACCAGCCGGGGGAAGGCAGC
ACGACGGGCACACCGTCGGTGGGCAGCTTTACCTGCAGTGCGCAGGTGCGCCCGGCACAGGTGCAGCTCAAGGACTACAC
CTTCAAAAACCCGGCGTGGCCGGCAGAATTCAGCCAGCAGATGAAGGAAGACACCTTACAGCAGATGTACTACGAGCACT
ACGACTACCCGGGGCGGTTTAAGGACGAAGCCCACGGCCAGGCCTTCACCCGCTACCGGCTGGAAGCGCTGCGCAGTGAC
GCGGTGACGGGACAGGCCAGCGGGCAGGCCATTGCCGTGCAACCGGGCAAATTATTTACCCTGTTTAACCACCCGCGTGA
AGACCTGAACCAGCCGTGGCAGGTGGTGGGCGCGAGCCACACCGGCAGCCAGCCGCAGGCGCGGGAAACCGCCAGCAGCG
ACAGCGGCACCACGCTGCACAGCCAGTTCAGCTTCATCCGCCACAACCAGCACTGGCGGCCGGCCCCGTTGCCGAAACCG
ACCATTGACGGCCCGCAGATTGCCAAGGTGGTGGGGCCGGCCGGGGAAGAAATCTTCTGTGACCAGTACGGGCGCATCCG
GCTGCAGTTCCCGTGGGACCGATACGGAAAAAGCGACGACCAGAGTTCGTGCTGGATACGGGTGAGCCAGCCGTGGGCCG
GGCAGGGCTGGGGCATGCTGGCGATTCCGCGCATCGGTCAGGAAGTGGTGGTGGACTTCCTGCACGGCGACCCGGACCAG
CCGATTGTGACCGGCAGAACGTATCACGCCAGTAACATCCCACCGGGCGCGCTGCCGGGCAGCAAGACCCAGATGGCGTT
CCGCTCCAAGACCCACAAGGGGGAGGGGTATAACGAACTGCTGTTTGAGGATGCGAAGGGCAGTGAAAGGCTGGCGCTGC
ATGCGCAGAAGGACATGCACACCACGGTGAAAGATAACCAGAGCCTGGTGGTGGAGGCGGGTGACCGCACGCTGACTGTC
CAGACGGGGGATGAGCACAAAACCGTTAAACAGGGCAATCTGACGGAGACCATCTGCCAAACCCGCAGCACCGAGGCCAA
CGTGATACAGGTGAAGGCGAAGGCGGGCAAAGCGGGGCTGGGAACGCAGCTGTATCAGGCTGAGGATAATATCACTCTGC
AGGTGGGTAAGGGTAGCATCGAGATGACACCGGAGCATATCCGGGTGGCATTTGGCTCATCGGTTATCCTGCTGAACAGC
AGCGGAGTCTTTGTGGATGGCCCGGCTATTGGGTTGAACAACGGCAGTGCAGGAGCGGGACTGCCGCCGGCCGCCGCAGA
CGGGGGTGACAGTGCTTCGGAGAGTGGAAGTTTGCTTCCGGCAGCGGTGATGGCGGCGGGTCTGGGACCGATGGGGATGG
CGGCTCTGGGATCGATGGGGCTGATTTCTTCCGCGTCGGCGGCAACGCCAGCATCAGCACCAAGACCTATGCCCACTCCC
GCCGATGGGGCAGGGAGACAGGCAGCACCTGCTGACTCTCAGGCAACGCCAGCATCCGCTCCAAGATCTATGCCTGTTCC
AGTCAATGGGGCAGGGCGACAAGCAGTACCTGCTGGTTCTCAGGTAGCGGCACCATCAGCACCCCCTGTATCTGCAACTA
ATTTAACCACCAGCACGAAAAAGACCATGGGACAAGATGGACTGGATTTATTAAAAGGTATCGAGTCATTGAGATTAAAA
CCTTATGATGACCAGACAGGGAAAACCGTCACCAAATGGACTAAAGGCGCTACAATTGGCTATGGTAAATTAATTGAGAA
GAAAGACTGGGATACCTATAAAGACGGTATTACCGAAGATGAGGCTGAGGAGTTATTTAAAAAGACACTGGCACCTTTTG
AGAAAACCGTTAATGACGGAATTACAAAAGAGATAAACCAGAATCAGTTTGATGCCTTAACCATGTTTGCATATAACATT
GGTGCAAAAGGATTCAATGATTCATCTGTTCTAAAACTGGTAAATGATGAAAATGCCAAAACCGACTATGACACGCTGGA
TGATGCCTGGAAGGCTTGGAATAAATCGCAAGGCAAAGTTAATCAGGGCGTAATAAACAGACGCGCAGCTGAGTTAAAAA
TCTATAACGAAGGAGTTTATGAAAGATGGTAA