Detailed information of component protein


Summary

Component ID T6CP011808
Component protein type FHA
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (432 a.a.); Nucleotide sequence (1296 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01175
Coordinate (Strand) 275355..276650 (+)
NCBI ID WP_012986881.1
RefSeq NC_013892
Uniprot ID D3UYP1_XENBS
KEGG ID xbo:XBJ1_0268
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-431 MEKQQPTLSLRVLNSEQLESGRSASCLFSAQGGTVGSSESHLWSVQDQQGNIHPSQFSVQWRDGAFCLQVLAEPVQINNAALTPQSSLIRLQQGDQIKAGNLSIKIHISFSDADRVDPSTVSPESLVSSYSNPLDAMMEGAVVQKAVFADDNSIAPTIQHSFSDDPLRVLDSESLTTLKQQVEADDTEQLLPPDHFQSPPFANPISDNRGSVMDQEFLDLPGITSERQYADMDVDHVAITPLMRGLDAQLPLHDSQQANDFLQEMGKTMKAAIEGLLALQREQHGLRDKQLRPIEDNPLRLNMDYDTTMQVMFSDQKSPVHLSAPAAVSESLHNLQLHYQANREAISAALDTMLEAFSPDQLLRRFSHYRRSNEVRNKDAAWAWEMYTNYYRELASSRQQGFEKLFREVYEQAYDRALRQGLEDSSNETFR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9077 - -


  Protein sequence: 432 a.a.    

>T6CP011808 NC_013892:275355-276650 [Xenorhabdus bovienii SS-2004] [FHA]
MEKQQPTLSLRVLNSEQLESGRSASCLFSAQGGTVGSSESHLWSVQDQQGNIHPSQFSVQWRDGAFCLQVLAEPVQINNA
ALTPQSSLIRLQQGDQIKAGNLSIKIHISFSDADRVDPSTVSPESLVSSYSNPLDAMMEGAVVQKAVFADDNSIAPTIQH
SFSDDPLRVLDSESLTTLKQQVEADDTEQLLPPDHFQSPPFANPISDNRGSVMDQEFLDLPGITSERQYADMDVDHVAIT
PLMRGLDAQLPLHDSQQANDFLQEMGKTMKAAIEGLLALQREQHGLRDKQLRPIEDNPLRLNMDYDTTMQVMFSDQKSPV
HLSAPAAVSESLHNLQLHYQANREAISAALDTMLEAFSPDQLLRRFSHYRRSNEVRNKDAAWAWEMYTNYYRELASSRQQ
GFEKLFREVYEQAYDRALRQGLEDSSNETFR*

  Nucleotide sequence: 1296 bp    

>T6CP011808 NC_013892:275355-276650 [Xenorhabdus bovienii SS-2004] [FHA]
ATGGAAAAACAACAACCAACGCTTTCATTGCGGGTTCTCAACAGTGAGCAACTGGAAAGTGGCAGATCCGCCAGTTGCCT
GTTTTCGGCACAGGGCGGTACGGTCGGTAGCAGTGAAAGTCACCTGTGGTCTGTTCAGGATCAGCAGGGAAATATTCATC
CATCACAATTCTCCGTGCAGTGGCGGGATGGTGCATTCTGCCTGCAAGTACTCGCAGAACCTGTGCAGATCAACAATGCC
GCATTAACGCCTCAGTCAAGTCTGATCCGTTTGCAGCAGGGAGATCAGATTAAGGCGGGTAATCTGTCTATTAAGATCCA
CATCAGTTTTTCTGATGCAGATCGTGTTGATCCTTCGACGGTATCACCTGAATCCTTGGTATCGAGTTACAGCAACCCGC
TGGATGCCATGATGGAAGGCGCAGTAGTACAAAAAGCCGTGTTTGCCGACGATAACAGTATTGCTCCAACGATCCAGCAT
AGTTTCAGCGATGACCCGCTCAGGGTACTCGATAGCGAAAGCCTGACCACGCTGAAGCAGCAGGTTGAAGCTGATGATAC
TGAGCAGCTTTTGCCGCCGGATCATTTCCAATCACCCCCATTTGCTAACCCTATTTCTGATAACCGAGGCAGTGTTATGG
ATCAGGAGTTCCTTGATTTACCGGGTATCACTTCCGAGCGGCAGTACGCAGATATGGATGTTGATCATGTTGCCATTACC
CCTCTCATGCGTGGGCTGGATGCACAGTTACCTCTGCATGACAGCCAGCAGGCTAATGATTTTCTGCAAGAGATGGGCAA
AACCATGAAAGCCGCCATTGAAGGGTTATTGGCTCTCCAGCGTGAACAGCATGGACTGCGTGATAAACAACTACGCCCCA
TCGAAGATAACCCTCTGCGCCTGAATATGGATTATGACACCACCATGCAGGTGATGTTCTCGGATCAGAAAAGCCCGGTT
CACTTGTCTGCACCTGCGGCCGTCTCGGAAAGTCTGCATAACCTGCAATTGCATTATCAGGCCAATCGGGAAGCCATTTC
GGCAGCATTGGACACCATGCTGGAAGCTTTCTCCCCTGATCAATTGCTCCGTCGCTTCTCACATTACCGCCGCAGCAACG
AAGTCAGAAATAAAGATGCGGCCTGGGCGTGGGAAATGTACACCAACTATTACCGTGAATTAGCTTCCAGCCGCCAGCAG
GGGTTCGAAAAGCTATTCCGTGAGGTGTATGAGCAGGCTTATGACCGCGCACTGCGTCAGGGCTTAGAGGACTCCAGCAA
TGAAACGTTCCGCTAG