SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP008854
Component protein type	TssD
T6SS ID (Type)	T6SS00381 (Type i1)
Strain	Xenorhabdus bovienii SS-2004
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference	[1] Kochanowsky RM, Bradshaw C, Forlastro I, et al. Xenorhabdus bovienii strain jolietti uses a type 6 secretion system to kill closely related Xenorhabdus strains. FEMS Microbiol Ecol. 2020 Aug 1;96(8). pii: fiaa073. doi: 10.1093/femsec/fiaa073. PMID: 32558899

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XBJ1_RS01145
Coordinate (Strand)	268621..269139 (-)
NCBI ID	WP_012986874.1
RefSeq	NC_013892
Uniprot ID	A0A077QK64_XENBV, A0A077N040_XENBV, A0A077NUP8_XENBV, A0A077N9C9_XENBV, A0A077P3R6_XENBV, A0A077PM17_XENBV, A0A077PM98_XENBV, A0A0B6X4F4_XENBV, D3UYN4_XENBS
KEGG ID	xbo:XBJ1_0261, xbv:XBW1_0239
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	1.2e-33	18..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-172	MPTPCYISINGKTQGNITAGAFTAESVGNIFVQGHEDEMLVQEFDHIVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIVDIDCKMPHCQDPSKAEFTQLIRVSLSYRKINWEHTTAGTSGSDDWRAPIVA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9716	-	-

Protein sequence: 173 a.a.

						>T6CP008854 NC_013892:c269139-268621 [Xenorhabdus bovienii SS-2004] [TssD]
MPTPCYISINGKTQGNITAGAFTAESVGNIFVQGHEDEMLVQEFDHIVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPL
LYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIVDIDCKMPHCQDPSKAEFTQLIRVSLSYRKINWEHTTAGT
SGSDDWRAPIVA*					

Nucleotide sequence: 519 bp

						>T6CP008854 NC_013892:c269139-268621 [Xenorhabdus bovienii SS-2004] [TssD]
ATGCCAACTCCATGTTATATTTCCATCAATGGAAAAACTCAGGGCAATATTACTGCTGGTGCATTCACTGCTGAATCAGT
AGGTAATATTTTCGTTCAAGGTCACGAAGACGAAATGCTGGTTCAAGAATTTGACCACATTGTCACTGTCCCAACTGATC
CACAGTCAGGTCAGCCTTCTGGCCAGCGTGCGCATAAACCATTCCGCTTCACCGTTGCATTGAACAAAGCCGTTCCTCTG
CTTTACAACGCACTGGCTTCTGGCGAAATGTTACCTACTGTTGAATTGAAATGGTACCGTACTTCAATCGAAGGTAAACA
AGAGCATTTCTTCACGACCAAACTTGAAGATGCAACTATTGTTGACATTGATTGCAAAATGCCACATTGCCAAGATCCAT
CAAAAGCAGAATTTACTCAATTAATTCGTGTGTCTCTTTCTTATCGTAAGATTAACTGGGAACACACTACAGCAGGTACT
TCTGGTTCTGATGACTGGCGTGCGCCAATTGTTGCTTAA					