Detailed information of component protein
Summary
| Component ID | T6CP003907 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00381  (Type i1) |
| Strain | Xenorhabdus bovienii SS-2004 |
| Replicon | chromosome |
| Sequence | Protein sequence (246 a.a.); Nucleotide sequence (738 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XBJ1_RS01190 |
| Coordinate (Strand) | 278576..279313 (+) |
| NCBI ID | WP_173346404.1 |
| RefSeq | NC_013892 |
| Uniprot ID | UPI00156617F2 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.1e-57 | 25..226 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-204 | MEKSETLKTFQRQYQLPLRGESLNPMIDAATPLLGMVLRLQDMSDQALPDKLYQQVVTDIRAIEQFLQTKGYEPGAIVSFRYVLCTFIDETALGHGWNSQNGWLKQSLLVHFHNETWGGEKVFVLLERLMGETQRYQHLLEFIYLCLCLGYRGRYKVSTQKSDDFDRLFRRLQQQLHSLRGEAPPTTLYVDINERDERYRLSRR |
| Transmembrane helix | 205-227 | WTIKHLFWISVGLLAAIYSFYAI |
| Outside | 228-245 | RLGDQTQDILKQLSNLLR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9932 | - | - |
Protein sequence: 246 a.a.
>T6CP003907 NC_013892:278576-279313 [Xenorhabdus bovienii SS-2004] [TssL]
MEKSETLKTFQRQYQLPLRGESLNPMIDAATPLLGMVLRLQDMSDQALPDKLYQQVVTDIRAIEQFLQTKGYEPGAIVSF
RYVLCTFIDETALGHGWNSQNGWLKQSLLVHFHNETWGGEKVFVLLERLMGETQRYQHLLEFIYLCLCLGYRGRYKVSTQ
KSDDFDRLFRRLQQQLHSLRGEAPPTTLYVDINERDERYRLSRRWTIKHLFWISVGLLAAIYSFYAIRLGDQTQDILKQL
SNLLR*
MEKSETLKTFQRQYQLPLRGESLNPMIDAATPLLGMVLRLQDMSDQALPDKLYQQVVTDIRAIEQFLQTKGYEPGAIVSF
RYVLCTFIDETALGHGWNSQNGWLKQSLLVHFHNETWGGEKVFVLLERLMGETQRYQHLLEFIYLCLCLGYRGRYKVSTQ
KSDDFDRLFRRLQQQLHSLRGEAPPTTLYVDINERDERYRLSRRWTIKHLFWISVGLLAAIYSFYAIRLGDQTQDILKQL
SNLLR*
Nucleotide sequence: 738 bp
>T6CP003907 NC_013892:278576-279313 [Xenorhabdus bovienii SS-2004] [TssL]
CTGGAAAAGTCTGAGACGCTGAAAACGTTTCAGCGCCAGTATCAGCTACCGTTGCGTGGTGAAAGCCTCAACCCGATGAT
CGATGCGGCCACTCCCTTACTGGGAATGGTTCTGCGTTTGCAGGATATGAGTGATCAGGCACTGCCAGATAAGCTTTACC
AACAGGTTGTTACTGACATTCGAGCCATTGAGCAGTTTCTGCAAACCAAGGGTTATGAACCCGGCGCGATTGTTTCATTC
CGTTACGTACTATGCACCTTCATTGATGAAACCGCGTTGGGGCACGGCTGGAACAGTCAGAATGGCTGGTTGAAGCAATC
GTTGCTGGTTCACTTCCATAATGAAACCTGGGGAGGCGAAAAAGTTTTTGTATTGCTCGAACGCCTGATGGGGGAGACCC
AGCGCTACCAGCACCTGCTGGAGTTCATTTATCTCTGCCTCTGTCTGGGTTATCGCGGACGTTACAAAGTCAGCACCCAG
AAAAGCGATGACTTTGATCGCCTGTTCCGTCGCTTGCAGCAACAGCTTCACTCACTGCGTGGAGAAGCTCCGCCGACCAC
GCTATATGTCGATATCAACGAGCGTGATGAGCGTTATCGTCTGAGCAGACGTTGGACCATCAAGCACCTGTTTTGGATAA
GTGTAGGTTTACTGGCTGCCATTTACAGTTTCTATGCCATCCGCCTCGGTGATCAGACCCAAGACATATTAAAGCAGCTA
AGTAACTTATTGAGATAG
CTGGAAAAGTCTGAGACGCTGAAAACGTTTCAGCGCCAGTATCAGCTACCGTTGCGTGGTGAAAGCCTCAACCCGATGAT
CGATGCGGCCACTCCCTTACTGGGAATGGTTCTGCGTTTGCAGGATATGAGTGATCAGGCACTGCCAGATAAGCTTTACC
AACAGGTTGTTACTGACATTCGAGCCATTGAGCAGTTTCTGCAAACCAAGGGTTATGAACCCGGCGCGATTGTTTCATTC
CGTTACGTACTATGCACCTTCATTGATGAAACCGCGTTGGGGCACGGCTGGAACAGTCAGAATGGCTGGTTGAAGCAATC
GTTGCTGGTTCACTTCCATAATGAAACCTGGGGAGGCGAAAAAGTTTTTGTATTGCTCGAACGCCTGATGGGGGAGACCC
AGCGCTACCAGCACCTGCTGGAGTTCATTTATCTCTGCCTCTGTCTGGGTTATCGCGGACGTTACAAAGTCAGCACCCAG
AAAAGCGATGACTTTGATCGCCTGTTCCGTCGCTTGCAGCAACAGCTTCACTCACTGCGTGGAGAAGCTCCGCCGACCAC
GCTATATGTCGATATCAACGAGCGTGATGAGCGTTATCGTCTGAGCAGACGTTGGACCATCAAGCACCTGTTTTGGATAA
GTGTAGGTTTACTGGCTGCCATTTACAGTTTCTATGCCATCCGCCTCGGTGATCAGACCCAAGACATATTAAAGCAGCTA
AGTAACTTATTGAGATAG