Detailed information of component protein


Summary

Component ID T6CP009380
Component protein type TssA
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (479 a.a.); Nucleotide sequence (1437 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01210
Coordinate (Strand) 283499..284935 (+)
NCBI ID WP_012986888.1
RefSeq NC_013892
Uniprot ID D3UYP8_XENBS
KEGG ID xbo:XBJ1_0275
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 7e-77 218..461
ImpA_N PF06812.14 5.5e-13 14..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-478 MDIRTQFDWFGALLAPLSDEQTGKALSESDPAWEFIDGEMVKFGSLSHGTLEVDALQRQALQLFSEHSKDFRLMVHLLRTLQHAGHPAELILAIELLTEYVKNYWEKAWPVKPVLKRRLAQQVIKRFESAQSSFTDQASKSQRDEAQGALAHLAQCWHASEPDLAKDVDQLRTRYNRQPEARTAPTQTAPTTPEAASVAPSPQSPEQAPMPEVAVNSSSDKAWKQTLMTVADLLCERYPESPIGYSLRRHAVWHTITTAPMANATGKTPLAPASADRTADYLARLPTADNKLLAQIEQSLALAPYWLDGHAIAAQAAEQRGYSRVAQAMRDELKAFLARLPVLKTLSFSDLSPFISPDTLDWLTPEPDTSGSPGAASADQEAIWHCFQQQGLEAALQMLEEHQQSLTEPRDQFYGQLFTAQLLEEAGMTALAHQHYRNLLHTGQHMLLTEWEPSLLTLLAEKIPSPAKDTASHRSVNT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9362 - -


  Protein sequence: 479 a.a.    

>T6CP009380 NC_013892:283499-284935 [Xenorhabdus bovienii SS-2004] [TssA]
MDIRTQFDWFGALLAPLSDEQTGKALSESDPAWEFIDGEMVKFGSLSHGTLEVDALQRQALQLFSEHSKDFRLMVHLLRT
LQHAGHPAELILAIELLTEYVKNYWEKAWPVKPVLKRRLAQQVIKRFESAQSSFTDQASKSQRDEAQGALAHLAQCWHAS
EPDLAKDVDQLRTRYNRQPEARTAPTQTAPTTPEAASVAPSPQSPEQAPMPEVAVNSSSDKAWKQTLMTVADLLCERYPE
SPIGYSLRRHAVWHTITTAPMANATGKTPLAPASADRTADYLARLPTADNKLLAQIEQSLALAPYWLDGHAIAAQAAEQR
GYSRVAQAMRDELKAFLARLPVLKTLSFSDLSPFISPDTLDWLTPEPDTSGSPGAASADQEAIWHCFQQQGLEAALQMLE
EHQQSLTEPRDQFYGQLFTAQLLEEAGMTALAHQHYRNLLHTGQHMLLTEWEPSLLTLLAEKIPSPAKDTASHRSVNT*

  Nucleotide sequence: 1437 bp    

>T6CP009380 NC_013892:283499-284935 [Xenorhabdus bovienii SS-2004] [TssA]
ATGGACATCAGAACACAATTCGACTGGTTCGGCGCCCTGCTGGCGCCCCTGTCCGACGAACAGACGGGCAAGGCACTGAG
TGAGAGTGATCCCGCCTGGGAATTCATCGACGGCGAGATGGTCAAATTCGGCTCGCTGTCACATGGCACGCTGGAAGTTG
ACGCCCTCCAGCGACAGGCCTTGCAACTTTTCAGCGAGCACAGCAAGGACTTCCGGCTGATGGTTCACCTGCTGCGGACT
TTGCAGCATGCCGGCCACCCTGCCGAGCTGATTCTGGCGATAGAGCTGCTGACAGAGTACGTAAAAAACTACTGGGAAAA
AGCCTGGCCGGTCAAACCGGTATTGAAGCGCCGGCTGGCACAGCAGGTGATCAAACGGTTTGAATCGGCCCAGTCGAGCT
TCACTGATCAGGCCAGTAAAAGCCAGCGCGACGAGGCACAAGGCGCTCTGGCTCATCTGGCTCAGTGCTGGCACGCCAGT
GAGCCCGACCTTGCGAAAGACGTCGATCAACTGCGTACCCGCTATAACCGCCAGCCAGAGGCACGAACGGCGCCGACACA
GACGGCACCTACCACCCCTGAAGCGGCGTCGGTAGCTCCGTCGCCTCAGTCTCCTGAACAGGCGCCGATGCCTGAGGTGG
CGGTCAACAGTTCCAGTGATAAAGCATGGAAACAAACCCTGATGACGGTGGCGGATCTGCTGTGTGAACGGTATCCCGAA
TCCCCGATTGGCTATAGCCTGCGCCGCCATGCGGTCTGGCACACCATTACCACGGCGCCGATGGCGAACGCCACAGGCAA
AACGCCGCTGGCGCCGGCGTCGGCGGATCGTACCGCCGATTATCTGGCGCGACTGCCGACGGCGGATAACAAATTGCTGG
CGCAAATTGAGCAGAGCTTAGCCCTCGCCCCTTACTGGCTGGACGGCCATGCCATTGCCGCCCAAGCGGCGGAACAACGC
GGCTACAGCCGCGTTGCGCAGGCCATGCGTGACGAACTGAAGGCGTTTTTGGCTCGGCTGCCTGTACTGAAAACCTTAAG
TTTTTCCGACCTGAGTCCGTTTATTTCTCCTGACACTCTGGACTGGCTCACGCCGGAACCCGACACCAGCGGAAGCCCGG
GAGCCGCGTCGGCCGATCAGGAAGCCATCTGGCACTGCTTCCAGCAGCAAGGGCTGGAAGCCGCCCTTCAGATGCTGGAA
GAACACCAGCAGTCACTGACGGAGCCCCGGGATCAATTCTATGGTCAGTTGTTCACTGCCCAACTGCTTGAAGAAGCGGG
CATGACCGCACTGGCACACCAGCATTACCGGAACTTGTTACACACGGGACAACACATGTTACTCACTGAATGGGAACCCA
GCCTGCTGACCCTGCTGGCTGAAAAAATACCTTCGCCTGCGAAGGATACTGCGTCACACAGGAGCGTTAACACATGA