Detailed information of component protein
Summary
| Component ID | T6CP008855 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00381  (Type i1) |
| Strain | Xenorhabdus bovienii SS-2004 |
| Replicon | chromosome |
| Sequence | Protein sequence (147 a.a.); Nucleotide sequence (441 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XBJ1_RS01160 |
| Coordinate (Strand) | 272060..272500 (+) |
| NCBI ID | WP_012986878.1 |
| RefSeq | NC_013892 |
| Uniprot ID | A0A077QK60_XENBV, A0A077MX27_XENBV, A0A077NVP1_XENBV, A0A077NBM5_XENBV, A0A077NT21_XENBV, A0A077PID5_XENBV, A0A077PNV3_XENBV, A0A0B6X5F7_XENBV, D3UYN8_XENBS |
| KEGG ID | xbo:XBJ1_0265, xbv:XBW1_0235 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.4e-17 | 34..121 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-146 | MAALYSWNRGSSASLFERIQGKGSGSSRQSRMRSLLDSIKKHLKEVLNSRPGACQSAIDLGVIDLNDATATSVDFKQSIEWAIEECIRNYEPRISAVSVSAINDDSDPLLLSFHISAEILLDDINDIVEFSIQLDNNRRYCLERTQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9816 | - | - |
Protein sequence: 147 a.a.
>T6CP008855 NC_013892:272060-272500 [Xenorhabdus bovienii SS-2004] [TssE]
MAALYSWNRGSSASLFERIQGKGSGSSRQSRMRSLLDSIKKHLKEVLNSRPGACQSAIDLGVIDLNDATATSVDFKQSIE
WAIEECIRNYEPRISAVSVSAINDDSDPLLLSFHISAEILLDDINDIVEFSIQLDNNRRYCLERTQ*
MAALYSWNRGSSASLFERIQGKGSGSSRQSRMRSLLDSIKKHLKEVLNSRPGACQSAIDLGVIDLNDATATSVDFKQSIE
WAIEECIRNYEPRISAVSVSAINDDSDPLLLSFHISAEILLDDINDIVEFSIQLDNNRRYCLERTQ*
Nucleotide sequence: 441 bp
>T6CP008855 NC_013892:272060-272500 [Xenorhabdus bovienii SS-2004] [TssE]
ATGGCTGCGCTGTACAGTTGGAACAGGGGCAGCTCTGCCAGTCTGTTCGAGCGCATTCAAGGGAAGGGCTCCGGCTCTTC
CCGTCAGTCAAGGATGCGTTCACTGCTTGATTCTATAAAGAAGCATCTGAAGGAAGTGCTGAATTCTCGTCCTGGTGCCT
GTCAGAGTGCTATTGATCTGGGTGTTATTGATCTCAATGACGCGACGGCAACATCGGTGGATTTTAAGCAAAGCATCGAG
TGGGCGATAGAAGAGTGCATCAGAAATTATGAACCCAGAATATCAGCGGTTTCCGTCAGCGCCATCAACGATGATTCAGA
TCCGTTGCTGTTGAGCTTTCACATCAGCGCTGAAATCTTGTTGGATGATATCAACGATATTGTGGAATTCAGCATTCAGT
TGGATAACAACCGGCGCTATTGCCTGGAGCGAACTCAATAA
ATGGCTGCGCTGTACAGTTGGAACAGGGGCAGCTCTGCCAGTCTGTTCGAGCGCATTCAAGGGAAGGGCTCCGGCTCTTC
CCGTCAGTCAAGGATGCGTTCACTGCTTGATTCTATAAAGAAGCATCTGAAGGAAGTGCTGAATTCTCGTCCTGGTGCCT
GTCAGAGTGCTATTGATCTGGGTGTTATTGATCTCAATGACGCGACGGCAACATCGGTGGATTTTAAGCAAAGCATCGAG
TGGGCGATAGAAGAGTGCATCAGAAATTATGAACCCAGAATATCAGCGGTTTCCGTCAGCGCCATCAACGATGATTCAGA
TCCGTTGCTGTTGAGCTTTCACATCAGCGCTGAAATCTTGTTGGATGATATCAACGATATTGTGGAATTCAGCATTCAGT
TGGATAACAACCGGCGCTATTGCCTGGAGCGAACTCAATAA