Detailed information of component protein


Summary

Component ID T6CP003909
Component protein type TssM
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (1190 a.a.); Nucleotide sequence (3570 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01215
Coordinate (Strand) 284932..288501 (+)
NCBI ID WP_012986889.1
RefSeq NC_013892
Uniprot ID D3UYP9_XENBS
KEGG ID xbo:XBJ1_0276
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2e-73 519..833
IcmF-related_N PF14331.8 1.8e-69 214..465
IcmF_C PF06744.14 1.1e-19 1062..1167
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-27 MKWPSLSSLAPLKSALPALSKFKSLPR
Transmembrane helix 28-50 LKATMALALALIPCLLLIAVWVW
Outside 51-64 GPEWKLRNDTPLDS
Transmembrane helix 65-84 LAARWLATALIILMVLLWIG
Inside 85-462 IKAWRRLRQLEKLNLDVELKGVDPVRVDIEHQARYLDHWKAQLQRHLDSYNYLYQRPWYMMVGSQQSGKTTLIKEGYKLSDIAAPEYLRQDGDIALRLRCWLGEKAVIIDPDGGLIDQPVPVNSDKPQINSRLWESLLNWLTENRQRQPLNGIILTVDTLRLLTDNREQRDRYVREIHQRLQNLRLTFHSQLPLYLVMTKIDLLHGFEAMYPSLDRRQRDQILGVTFSLNNRDEKAWHSELAQFWQQWMANLNGAMPDMMLNGVDAGQRSALFSFTRQVQGLHSYIAQMLEDILYNDEHHRPMLRGVYLTSARQVGQMDDLFTQSASAQYHLGSQAFPTWPAGDTLPYFTQSLFEEVLLAEPNLAAENRLWLSRNRRQ
Transmembrane helix 463-485 LYTFATISALVIAAMWGGWHYFY
Outside 486-1189 QKNYRAGEEVLAQAKNFLSVPPPDGDDRYGNLQLPLLNPIRDATLAYGNYHEKKSFLTDMALYQGDGVGPYVEGTYLKLLEQRFLPSLMQGLLDDLNRAPAGSEEKLEILRVMRMMEDGSKRNNGLVGQYMRARWSKAFHGQRDLQAQLLTHLDYALAHTDWKGQRDKDNQDALARFAPFIKPMKQAQQELSALTINQRVYQNLRLKAQDTLSAPVNLRDQIGPSFDSVFIAGNESRLVIPQFLTRHGLTDYFVRQDKELVELTEMDSWVLNLPLKTNKYSDTDQGNIQREITELYVGDYTATWRAAMNNLEVRDFEDLPQAISAIEQVISGEQPIKRALQILSDNTRPPELVSGLSDKEKQALLAQSDYRLLNRISRDFAPETGVLVEHGDKGSALQSVYQKLMALHRYLLAIQNSPVPGKAALQAVQLRLDQNNSDAIFEVQQMAKNLPEPLNRWVGDLAEQAWRVVMMEAVRSLEVEWNESVVKQYKTYLAGRYPFNPAATEDVPLSEFDRFFRPDGTLDTFYKQSLKPFVENNLTTGTDGRELIRADVLKQLAMADRIRTTFFTPQNGLGTAFAIEPVSLTGNKRRGLLNLDGQLVDYAHGRSNVAHLVWPNSMRAGTESRLTLMPDRSNAAPRSLSFTGPWAQLRLINSGKLTNVQPGAFDVRFAVDGGEITYRIYVDESDNPFAGGLFSQFRLPDTLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9672 - -


  Protein sequence: 1190 a.a.    

>T6CP003909 NC_013892:284932-288501 [Xenorhabdus bovienii SS-2004] [TssM]
MKWPSLSSLAPLKSALPALSKFKSLPRLKATMALALALIPCLLLIAVWVWGPEWKLRNDTPLDSLAARWLATALIILMVL
LWIGIKAWRRLRQLEKLNLDVELKGVDPVRVDIEHQARYLDHWKAQLQRHLDSYNYLYQRPWYMMVGSQQSGKTTLIKEG
YKLSDIAAPEYLRQDGDIALRLRCWLGEKAVIIDPDGGLIDQPVPVNSDKPQINSRLWESLLNWLTENRQRQPLNGIILT
VDTLRLLTDNREQRDRYVREIHQRLQNLRLTFHSQLPLYLVMTKIDLLHGFEAMYPSLDRRQRDQILGVTFSLNNRDEKA
WHSELAQFWQQWMANLNGAMPDMMLNGVDAGQRSALFSFTRQVQGLHSYIAQMLEDILYNDEHHRPMLRGVYLTSARQVG
QMDDLFTQSASAQYHLGSQAFPTWPAGDTLPYFTQSLFEEVLLAEPNLAAENRLWLSRNRRQLYTFATISALVIAAMWGG
WHYFYQKNYRAGEEVLAQAKNFLSVPPPDGDDRYGNLQLPLLNPIRDATLAYGNYHEKKSFLTDMALYQGDGVGPYVEGT
YLKLLEQRFLPSLMQGLLDDLNRAPAGSEEKLEILRVMRMMEDGSKRNNGLVGQYMRARWSKAFHGQRDLQAQLLTHLDY
ALAHTDWKGQRDKDNQDALARFAPFIKPMKQAQQELSALTINQRVYQNLRLKAQDTLSAPVNLRDQIGPSFDSVFIAGNE
SRLVIPQFLTRHGLTDYFVRQDKELVELTEMDSWVLNLPLKTNKYSDTDQGNIQREITELYVGDYTATWRAAMNNLEVRD
FEDLPQAISAIEQVISGEQPIKRALQILSDNTRPPELVSGLSDKEKQALLAQSDYRLLNRISRDFAPETGVLVEHGDKGS
ALQSVYQKLMALHRYLLAIQNSPVPGKAALQAVQLRLDQNNSDAIFEVQQMAKNLPEPLNRWVGDLAEQAWRVVMMEAVR
SLEVEWNESVVKQYKTYLAGRYPFNPAATEDVPLSEFDRFFRPDGTLDTFYKQSLKPFVENNLTTGTDGRELIRADVLKQ
LAMADRIRTTFFTPQNGLGTAFAIEPVSLTGNKRRGLLNLDGQLVDYAHGRSNVAHLVWPNSMRAGTESRLTLMPDRSNA
APRSLSFTGPWAQLRLINSGKLTNVQPGAFDVRFAVDGGEITYRIYVDESDNPFAGGLFSQFRLPDTLY*

  Nucleotide sequence: 3570 bp    

>T6CP003909 NC_013892:284932-288501 [Xenorhabdus bovienii SS-2004] [TssM]
ATGAAATGGCCCTCTTTGTCATCCTTGGCGCCGTTGAAATCAGCCTTGCCGGCGCTGTCAAAATTTAAATCCCTGCCGCG
TCTCAAGGCCACGATGGCGCTGGCTCTGGCCCTTATCCCCTGCCTGCTGCTGATCGCGGTCTGGGTGTGGGGGCCGGAAT
GGAAACTGCGCAACGATACCCCGCTGGACAGTCTGGCGGCGCGCTGGCTGGCGACCGCTCTCATCATCCTGATGGTGCTG
CTCTGGATCGGCATCAAAGCGTGGCGTCGCCTGCGCCAGCTGGAAAAACTCAACCTGGACGTCGAGCTGAAAGGGGTTGA
TCCGGTGCGGGTCGATATCGAGCACCAGGCTCGTTACCTTGATCACTGGAAAGCCCAGCTACAACGCCATCTGGACAGCT
ATAACTACCTGTATCAGCGTCCGTGGTACATGATGGTCGGCAGCCAGCAGAGCGGCAAAACCACGCTGATCAAGGAAGGC
TATAAACTGTCCGACATCGCGGCGCCGGAATACCTGCGTCAGGATGGCGACATTGCGCTGCGGCTGCGCTGCTGGCTGGG
AGAGAAAGCGGTCATCATCGATCCCGATGGCGGCCTGATTGACCAGCCGGTGCCGGTCAACAGTGACAAACCGCAGATCA
ACAGCCGCCTGTGGGAATCCCTGCTGAACTGGCTGACGGAAAACCGCCAGCGCCAGCCGCTTAACGGCATTATTCTGACC
GTCGATACCCTGCGCCTGCTGACCGACAACCGGGAGCAACGCGATCGCTACGTGCGGGAAATCCACCAGCGCCTGCAAAA
CCTCCGTCTGACCTTCCACAGCCAGCTGCCGCTCTATCTGGTCATGACCAAAATAGACCTGCTGCACGGCTTCGAAGCGA
TGTACCCGTCGCTGGATCGCCGGCAGCGTGACCAGATCCTCGGCGTGACTTTCAGCCTCAATAACCGGGATGAAAAAGCC
TGGCACAGCGAGCTGGCGCAGTTCTGGCAGCAGTGGATGGCCAACCTCAACGGGGCGATGCCGGACATGATGCTCAACGG
CGTCGATGCCGGCCAGCGCAGCGCTCTGTTCAGCTTTACCCGGCAGGTGCAGGGGCTGCACAGCTATATCGCGCAGATGC
TGGAAGACATCCTGTACAACGATGAACACCACCGCCCGATGCTGCGCGGTGTCTACCTGACCTCCGCCCGTCAGGTCGGC
CAGATGGATGACTTGTTCACCCAGTCCGCCTCAGCCCAGTATCACCTCGGCTCGCAGGCGTTCCCGACCTGGCCGGCGGG
CGATACCCTGCCGTATTTTACCCAGTCCCTGTTTGAGGAAGTGCTGCTGGCTGAGCCGAACCTCGCCGCGGAAAACCGCC
TCTGGCTGAGCCGCAACCGCCGCCAGCTGTACACCTTCGCCACGATCAGTGCCTTAGTCATCGCGGCCATGTGGGGCGGC
TGGCATTATTTCTACCAGAAAAACTACCGGGCCGGGGAAGAAGTGCTGGCGCAGGCGAAAAACTTCCTGTCCGTGCCGCC
GCCGGACGGGGATGACCGTTACGGCAACCTCCAGCTGCCGCTGCTGAACCCGATCCGGGATGCCACTCTGGCCTACGGCA
ACTACCACGAGAAAAAATCCTTCCTGACCGACATGGCGCTGTATCAGGGGGACGGGGTCGGGCCGTATGTGGAAGGCACC
TACCTGAAACTGCTGGAGCAGCGTTTCCTGCCGTCGCTGATGCAGGGGCTGCTGGACGACCTGAATCGGGCGCCGGCCGG
CAGTGAGGAAAAACTCGAGATCCTGCGGGTGATGCGCATGATGGAAGACGGCAGCAAGCGTAACAACGGCTTGGTCGGGC
AGTACATGCGGGCGCGCTGGAGCAAGGCGTTCCACGGCCAGCGGGATTTACAGGCGCAGCTGCTGACCCATCTGGATTAC
GCTCTGGCCCATACCGACTGGAAGGGGCAGCGCGACAAGGACAATCAGGATGCCCTCGCCCGCTTTGCGCCGTTTATTAA
GCCGATGAAGCAGGCCCAGCAGGAGCTGAGTGCCCTGACCATCAACCAGCGGGTTTACCAGAACCTGCGCCTGAAGGCCC
AGGATACCCTGTCCGCCCCGGTTAACCTGCGTGACCAGATTGGGCCGAGTTTTGACAGCGTGTTTATTGCCGGCAACGAA
AGCCGGCTGGTGATCCCGCAGTTCCTGACCCGCCACGGCCTGACGGATTACTTTGTCCGGCAGGACAAGGAGCTGGTCGA
ACTGACCGAGATGGACAGCTGGGTGCTGAACCTGCCGCTGAAAACCAATAAGTACAGCGACACCGATCAGGGGAATATCC
AGCGTGAGATCACCGAACTGTATGTCGGGGATTATACCGCGACCTGGCGGGCGGCGATGAACAATCTGGAAGTGCGGGAC
TTTGAGGATCTGCCGCAGGCCATCAGCGCCATCGAGCAGGTGATCAGCGGCGAACAGCCGATCAAGCGCGCGCTGCAAAT
CCTCAGTGACAACACCCGGCCGCCGGAGCTGGTGAGTGGGCTGAGCGACAAGGAAAAACAGGCGCTGCTGGCGCAGTCGG
ATTACCGGCTGTTAAACCGCATCAGCCGGGACTTTGCGCCGGAAACCGGGGTGCTGGTTGAGCACGGCGACAAGGGCAGT
GCCCTGCAAAGCGTTTACCAGAAACTGATGGCACTGCACCGTTACCTGCTGGCTATCCAGAACTCGCCGGTGCCGGGCAA
GGCGGCATTGCAGGCGGTGCAGCTGCGGCTGGACCAGAACAACAGCGACGCGATATTTGAAGTGCAGCAGATGGCGAAAA
ACCTGCCGGAGCCGCTGAACCGCTGGGTCGGTGATCTGGCCGAGCAGGCGTGGCGGGTGGTGATGATGGAAGCGGTGCGC
TCGCTGGAAGTGGAATGGAATGAGTCGGTGGTCAAACAGTATAAAACCTACCTGGCCGGCCGGTATCCGTTCAACCCGGC
GGCCACCGAAGACGTACCGCTGAGTGAGTTTGACCGTTTCTTCCGGCCGGACGGCACGCTGGATACCTTCTATAAGCAGA
GCCTGAAACCGTTCGTGGAAAACAACCTGACCACCGGCACCGACGGGCGTGAGCTTATCCGGGCGGATGTGCTGAAACAG
CTGGCGATGGCGGACCGTATCCGCACCACCTTCTTCACCCCGCAGAACGGGCTGGGCACGGCGTTTGCCATCGAGCCGGT
GAGCCTGACCGGCAACAAACGCCGCGGTCTGCTGAACCTCGACGGCCAGCTGGTGGATTACGCGCACGGGCGCAGCAACG
TGGCGCATCTGGTGTGGCCGAACTCGATGCGGGCGGGCACGGAAAGCCGGCTGACCCTGATGCCGGACCGGAGCAACGCG
GCGCCGCGCAGCCTGAGCTTCACCGGCCCGTGGGCGCAGCTGCGGCTGATTAACAGCGGCAAGCTGACCAACGTGCAGCC
GGGGGCGTTTGACGTGCGCTTCGCGGTAGACGGCGGCGAGATAACCTACCGCATTTACGTGGACGAATCGGACAACCCGT
TTGCGGGCGGCCTGTTCAGCCAGTTCAGACTGCCGGACACCCTCTACTGA