Detailed information of component protein


Summary

Component ID T6CP003903
Component protein type TssF
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (611 a.a.); Nucleotide sequence (1833 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01165
Coordinate (Strand) 272501..274333 (+)
NCBI ID WP_012986879.1
RefSeq NC_013892
Uniprot ID D3UYN9_XENBS
KEGG ID xbo:XBJ1_0266
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.8e-151 3..606
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-610 MSFEKYFRDELNYLRQLGKEAAVERPHLAAFLSEQGSDPDVERLLEGFAFLTGNLRAKIDDQFPELTHGLLNMLWPNYLRPTPSMTIIEYTPDESVVTKATPVKRGTQIMSNTLSTHDDIYSNEKSGGKRDEQGRCTFTLCRDVWLFPLSIQDISVNNSNEQGIIGLNFASKTELSLHELELDKLRFYLSGDDYTTSQLYFWLCYYFRKAELVVGDKVIPLPDFDFVPVGFEREDALLPYPKNAYMGYRILQEYFCFAESFLFFDVKGFPTLPEDLKTKDFKLNLHFSQALPPEAKIRHDTFRLHCTPAINLFPMDSEAIELNGSQAEYPLKASYSLPDNYDIFSVDGVESWLAGENGERSRARIGERVYTPFESFNHQIDDEDERSMRYYRLRVKESPFRRGLEHFISFVRGDESDLLRLKLKENVSISLTCTNRELPLQLRVGDINYPSIGSPTFATFRNITRPSVPLYPLLDGGLHWSLLSNMSLNYMSLLDKDALKQVLRTYDFPSIHNRQSKRSSQKRLDAIEKIETEPTDRLFRGQPVRGLRSTLYIRQQAFSSEGELYLFSTILSRFFSLYASVNAFHMLKVINLDNQECYEWPVQIGQHSLM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 611 a.a.    

>T6CP003903 NC_013892:272501-274333 [Xenorhabdus bovienii SS-2004] [TssF]
MSFEKYFRDELNYLRQLGKEAAVERPHLAAFLSEQGSDPDVERLLEGFAFLTGNLRAKIDDQFPELTHGLLNMLWPNYLR
PTPSMTIIEYTPDESVVTKATPVKRGTQIMSNTLSTHDDIYSNEKSGGKRDEQGRCTFTLCRDVWLFPLSIQDISVNNSN
EQGIIGLNFASKTELSLHELELDKLRFYLSGDDYTTSQLYFWLCYYFRKAELVVGDKVIPLPDFDFVPVGFEREDALLPY
PKNAYMGYRILQEYFCFAESFLFFDVKGFPTLPEDLKTKDFKLNLHFSQALPPEAKIRHDTFRLHCTPAINLFPMDSEAI
ELNGSQAEYPLKASYSLPDNYDIFSVDGVESWLAGENGERSRARIGERVYTPFESFNHQIDDEDERSMRYYRLRVKESPF
RRGLEHFISFVRGDESDLLRLKLKENVSISLTCTNRELPLQLRVGDINYPSIGSPTFATFRNITRPSVPLYPLLDGGLHW
SLLSNMSLNYMSLLDKDALKQVLRTYDFPSIHNRQSKRSSQKRLDAIEKIETEPTDRLFRGQPVRGLRSTLYIRQQAFSS
EGELYLFSTILSRFFSLYASVNAFHMLKVINLDNQECYEWPVQIGQHSLM*

  Nucleotide sequence: 1833 bp    

>T6CP003903 NC_013892:272501-274333 [Xenorhabdus bovienii SS-2004] [TssF]
ATGTCATTTGAAAAATATTTCAGAGATGAGTTGAATTATCTGCGACAACTGGGGAAAGAAGCCGCAGTTGAGCGTCCTCA
TCTTGCCGCATTTCTGTCTGAACAAGGTTCTGACCCCGACGTTGAGCGTTTGCTTGAAGGTTTTGCATTCCTGACTGGCA
ATCTACGGGCAAAGATTGATGATCAATTCCCCGAACTGACTCATGGCCTGCTCAATATGCTTTGGCCTAATTACCTGCGT
CCGACGCCCAGTATGACTATCATCGAGTACACACCCGATGAGAGCGTCGTGACGAAAGCGACACCGGTCAAGCGTGGCAC
GCAGATTATGAGTAACACGCTGTCAACTCATGATGATATTTATTCGAACGAAAAATCGGGTGGTAAAAGAGACGAACAAG
GCCGCTGTACTTTTACGCTGTGTCGTGATGTCTGGCTTTTCCCTCTCTCCATCCAAGACATTTCTGTCAATAACAGTAAT
GAGCAAGGCATCATCGGCCTGAATTTTGCGTCGAAAACTGAACTGAGCCTGCATGAACTGGAACTGGACAAACTGCGTTT
TTACCTGAGCGGTGATGACTATACCACTTCTCAGCTCTACTTCTGGCTCTGTTATTACTTCAGAAAAGCAGAACTGGTGG
TTGGCGATAAGGTAATCCCACTACCGGATTTTGATTTTGTGCCGGTAGGGTTTGAACGGGAAGATGCCCTGTTGCCGTAC
CCCAAAAACGCTTACATGGGATATCGCATTTTGCAGGAATATTTCTGTTTTGCGGAGAGCTTCCTGTTTTTTGATGTGAA
GGGTTTCCCAACATTACCTGAAGATCTTAAGACCAAAGATTTCAAACTGAATTTACATTTTTCTCAGGCATTACCACCAG
AAGCCAAGATTCGGCATGATACTTTCCGTCTGCACTGTACACCAGCCATCAACCTGTTTCCGATGGACAGTGAAGCTATT
GAACTCAATGGCAGCCAGGCTGAATATCCATTGAAGGCCAGTTATAGCCTCCCCGATAACTACGATATTTTTTCCGTCGA
TGGCGTTGAAAGCTGGTTGGCGGGTGAAAATGGTGAACGCAGTCGGGCACGTATCGGCGAGCGTGTCTATACACCGTTCG
AAAGTTTCAATCACCAGATTGATGACGAAGATGAACGCTCAATGCGTTATTACCGCCTTCGGGTGAAAGAATCGCCTTTC
CGTCGGGGGCTGGAACATTTCATCTCATTTGTACGGGGAGATGAATCGGATCTGCTCAGACTCAAACTAAAAGAAAATGT
TTCTATCAGTTTGACATGTACTAACCGTGAATTGCCGTTGCAGCTGCGTGTTGGCGACATTAATTACCCATCCATCGGCA
GCCCGACATTTGCGACATTCCGCAATATCACGCGCCCGTCAGTGCCACTCTATCCTCTTCTGGATGGCGGTCTGCACTGG
TCGCTACTGTCAAACATGTCGCTGAACTATATGTCATTGCTGGATAAGGACGCGCTGAAGCAGGTACTGCGTACCTATGA
TTTCCCGAGTATCCATAACCGACAGTCCAAACGGTCATCGCAGAAACGGCTTGATGCCATTGAAAAGATCGAGACAGAGC
CGACAGATCGCCTGTTTCGTGGGCAGCCCGTTCGCGGCTTGCGCTCCACGCTATATATCCGGCAACAGGCATTCAGCTCA
GAAGGCGAGCTTTATCTGTTCAGTACGATTTTGTCACGGTTTTTCTCACTGTATGCCAGCGTCAACGCTTTTCATATGTT
GAAGGTAATCAATTTAGATAATCAGGAGTGTTATGAATGGCCGGTACAGATAGGTCAACACTCATTGATGTAA