Detailed information of component protein


Summary

Component ID T6CP003908
Component protein type TssH
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (905 a.a.); Nucleotide sequence (2715 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01195
Coordinate (Strand) 279323..282037 (+)
NCBI ID WP_012986885.1
RefSeq NC_013892
Uniprot ID D3UYP5_XENBS
KEGG ID xbo:XBJ1_0272
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.6e-38 639..800
AAA_lid_9 PF17871.3 1.7e-29 361..465
ClpB_D2-small PF10431.11 4.2e-11 806..879
AAA PF00004.31 4.9e-08 222..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-904 MIQIDLPTLVNRLNPMTRHALEAAAASCVSQQQPEITVAQLLFQMIDTPLSDVRLILNKADIDKDLLKEQLDQMMPHHQAIVQTYPNFSPMLVEWLQDSWLLASTEMQHTELRGGVMLIALLFSPMRYLTPQPARMLAGINRELLRQNFTEWTNGSAEQPFSGDDKNGQGVHPANSDSLLARFTQNMTEQARQGKLDPVLCRDNEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLALRIINDRVPDKLRHSELMTLDLGALQAGAAVKGEFEKRFKGIMAEISQSSKPIILFIDEAHTLIGAGNQAGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPSAEEATVIMRGLRAIYEQAHGVLIDDEALKASAVLSDRYLSGRQLPDKAIDVLDTACARVAINLTSPPRQISSLTTELHQMQMEIDVLKREQRMGLNEHADRLEELQNQQVEIQEELVTLEKNWRQQQELVTQIIELRGQLLADSDESVAAETTDKTIENAVEETAQDAKEQEAIAQDEPEAAADEQSLIEKLALLNAQLTELQQKQTLVSPHVDKTQIASVIAEWTGVPLNRLSQSELSIVTELPTHLGQSIKGQDVAIQNLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNVVFFLTSNLGYQTIVDHAEQPDQLNDLLYPELAAFFKPALLARMEVIPYLPLGHETLKTIIQSKLARLDSLLSQRFNAEVTISDDVSEEILQRATRAENGARMLESIIDGALLPPVSLLLLQKMAAGTAISAIRLTVAEHEFHAEVEEAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9604 - -


  Protein sequence: 905 a.a.    

>T6CP003908 NC_013892:279323-282037 [Xenorhabdus bovienii SS-2004] [TssH]
MIQIDLPTLVNRLNPMTRHALEAAAASCVSQQQPEITVAQLLFQMIDTPLSDVRLILNKADIDKDLLKEQLDQMMPHHQA
IVQTYPNFSPMLVEWLQDSWLLASTEMQHTELRGGVMLIALLFSPMRYLTPQPARMLAGINRELLRQNFTEWTNGSAEQP
FSGDDKNGQGVHPANSDSLLARFTQNMTEQARQGKLDPVLCRDNEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLAL
RIINDRVPDKLRHSELMTLDLGALQAGAAVKGEFEKRFKGIMAEISQSSKPIILFIDEAHTLIGAGNQAGGLDISNLLKP
ALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPSAEEATVIMRGLRAIYEQAHGVLIDDEALKASAVLSDRYL
SGRQLPDKAIDVLDTACARVAINLTSPPRQISSLTTELHQMQMEIDVLKREQRMGLNEHADRLEELQNQQVEIQEELVTL
EKNWRQQQELVTQIIELRGQLLADSDESVAAETTDKTIENAVEETAQDAKEQEAIAQDEPEAAADEQSLIEKLALLNAQL
TELQQKQTLVSPHVDKTQIASVIAEWTGVPLNRLSQSELSIVTELPTHLGQSIKGQDVAIQNLHKHLLTARADLRRPGRP
LGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLD
EVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNVVFFLTSNLGYQTIVDHAEQPDQLNDLLYPELAAFFKPALLARMEV
IPYLPLGHETLKTIIQSKLARLDSLLSQRFNAEVTISDDVSEEILQRATRAENGARMLESIIDGALLPPVSLLLLQKMAA
GTAISAIRLTVAEHEFHAEVEEAE*

  Nucleotide sequence: 2715 bp    

>T6CP003908 NC_013892:279323-282037 [Xenorhabdus bovienii SS-2004] [TssH]
ATGATTCAGATTGATCTGCCCACTCTTGTAAACCGTTTAAACCCGATGACCCGCCATGCACTGGAAGCGGCGGCGGCATC
CTGTGTCAGCCAACAGCAGCCTGAAATTACTGTTGCACAACTGTTGTTTCAGATGATCGACACACCACTCAGTGATGTGC
GCCTGATCCTCAATAAGGCAGACATCGATAAAGATCTGCTGAAAGAACAACTCGATCAGATGATGCCTCATCATCAGGCG
ATTGTACAAACCTACCCGAACTTCTCACCGATGCTGGTGGAATGGTTACAGGATAGCTGGCTGCTGGCTTCTACGGAGAT
GCAGCATACTGAATTACGCGGTGGCGTCATGCTGATTGCTCTGCTGTTCAGTCCAATGCGTTATCTGACTCCACAGCCCG
CGCGCATGCTGGCGGGTATCAACCGTGAATTGCTGCGTCAGAACTTTACTGAATGGACGAATGGCTCTGCCGAACAGCCT
TTCAGCGGCGACGATAAAAATGGGCAGGGCGTCCATCCGGCAAACAGCGACAGCCTGCTGGCGCGTTTTACCCAGAATAT
GACTGAACAGGCGCGTCAGGGCAAACTTGATCCTGTGCTGTGCCGTGATAACGAAATCGATCTGATGATCGACATTCTCT
GCCGTCGCCGCAAAAACAACCCGATCGTCGTGGGTGAAGCGGGGGTGGGTAAAAGTGCCCTGATTGAAGGTCTGGCGCTG
CGCATCATCAATGACCGCGTACCGGATAAATTGCGCCACAGTGAACTGATGACACTGGATCTGGGGGCATTGCAGGCAGG
GGCTGCGGTTAAAGGTGAGTTTGAAAAACGCTTCAAAGGCATCATGGCTGAAATTAGTCAATCATCTAAGCCGATCATCC
TGTTTATCGATGAAGCGCACACCCTGATTGGTGCCGGTAACCAGGCTGGCGGACTGGATATTTCCAATCTGCTGAAACCT
GCATTGGCACGTGGTGAACTGAAAACCATCGCAGCGACTACATGGAGCGAGTACAAAAAATACTTCGAAAAGGACGCAGC
ACTGTCTCGTCGCTTCCAATTAGTGAAAGTCTCTGAGCCAAGCGCGGAAGAAGCCACTGTGATCATGCGTGGTTTGCGCG
CCATTTACGAACAGGCGCATGGTGTTCTGATCGATGATGAAGCACTGAAAGCCTCTGCGGTACTGAGTGACCGTTATCTC
TCTGGCCGCCAACTGCCGGACAAAGCGATTGACGTACTGGATACCGCCTGTGCCCGTGTCGCCATTAACCTGACATCGCC
ACCACGTCAGATCTCCTCACTGACGACTGAATTGCACCAGATGCAAATGGAAATCGATGTTCTGAAAAGAGAACAGCGGA
TGGGGCTGAATGAACATGCGGACAGACTGGAAGAACTGCAAAACCAGCAGGTAGAGATCCAAGAAGAACTCGTCACGCTG
GAAAAAAACTGGCGGCAACAGCAAGAGTTGGTGACACAGATCATCGAATTGCGCGGCCAACTCCTGGCGGATAGCGACGA
GTCAGTTGCAGCAGAAACGACGGATAAAACCATCGAAAATGCGGTTGAAGAGACGGCTCAAGACGCGAAAGAGCAGGAAG
CTATTGCGCAAGACGAGCCAGAAGCCGCCGCTGATGAGCAATCCCTGATCGAAAAACTGGCTCTGCTCAACGCACAACTG
ACAGAGTTACAGCAGAAGCAAACGCTGGTTTCTCCCCATGTAGACAAAACGCAGATTGCCTCGGTTATCGCTGAGTGGAC
GGGCGTTCCATTGAACCGCCTGTCACAGAGCGAACTGTCTATCGTGACCGAACTGCCTACCCATCTGGGACAAAGCATCA
AAGGGCAGGATGTTGCGATCCAGAACCTGCATAAACACCTGCTGACCGCTCGTGCAGATTTGCGTCGTCCGGGACGTCCT
CTGGGCGCATTCCTGCTGGTGGGGCCAAGTGGTGTTGGTAAAACCGAAACCGTGCTGCAAATTGCTGAACTGATGTTTGG
GGGGCGCCAATACCTCACCACCATCAACATGTCTGAGTTTCAGGAGAAACATACCGTTTCCCGCCTGATTGGCTCTCCCC
CGGGCTACGTAGGTTATGGGGAAGGTGGTGTACTGACCGAAGCCATTCGCCAGAAACCGTACTCCGTTGTGCTGCTGGAT
GAAGTCGAAAAAGCGCATCCTGATGTACTGAACCTGTTCTATCAGGCCTTCGACAAAGGCGAACTGGCCGATGGCGAAGG
GCGTATCATCGACTGTAAAAATGTCGTGTTCTTCCTGACTTCTAACCTTGGTTATCAAACTATCGTTGATCATGCCGAGC
AGCCAGATCAACTTAACGACCTGCTCTACCCTGAACTGGCCGCGTTTTTCAAACCCGCATTGCTGGCGCGTATGGAAGTG
ATCCCTTACCTGCCTTTGGGTCACGAAACGCTGAAAACCATCATTCAGAGCAAGCTGGCTCGACTGGATAGCCTGCTGTC
TCAGCGCTTTAACGCCGAAGTCACGATCAGCGATGACGTATCGGAAGAGATCCTGCAACGTGCCACCCGTGCGGAAAACG
GCGCCCGTATGCTGGAATCCATCATTGATGGTGCACTATTACCGCCTGTTTCATTACTGCTGTTGCAGAAAATGGCCGCA
GGCACCGCAATCAGTGCCATTCGCTTAACCGTAGCAGAACATGAGTTCCATGCTGAGGTTGAGGAGGCAGAATAA