SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP003904
Component protein type	TssG
T6SS ID (Type)	T6SS00381 (Type i1)
Strain	Xenorhabdus bovienii SS-2004
Replicon	chromosome
Sequence	Protein sequence (351 a.a.); Nucleotide sequence (1053 bp)
Reference	[1] Kochanowsky RM, Bradshaw C, Forlastro I, et al. Xenorhabdus bovienii strain jolietti uses a type 6 secretion system to kill closely related Xenorhabdus strains. FEMS Microbiol Ecol. 2020 Aug 1;96(8). pii: fiaa073. doi: 10.1093/femsec/fiaa073. PMID: 32558899

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XBJ1_RS01170
Coordinate (Strand)	274297..275349 (+)
NCBI ID	WP_012986880.1
RefSeq	NC_013892
Uniprot ID	A0A077QCP1_XENBV, A0A077P8K0_XENBV, D3UYP0_XENBS
KEGG ID	xbo:XBJ1_0267
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	7.2e-94	27..336

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-350	MAGTDRSTLIDVITEQDPATPLALDISQYNFYQLVELLNQLAVAWEKTGETDRPDRESVRFRASASLAFPTRDVISLSQTRRGYFELEVSFMGLHGSQSPMPGYYLDSLAWEEAQNENRLTDFLNLFNHRLITLLHQIWRKYRYYVCFKKGGEDHFSQRMFSLVGLGSDVNRRMLNINHSKMLAYAGLLASPGRSPEVICSLVSHCFDLQDVTLHGWQFRKVTIPLDQQNRLGSERKGQVIGDSKLSMLGQNFTIGSWVGDYSGKFLLSINNLTRDRFLSFLPDGKNYAPLVMFISFVMRSQFAWELRLGLAENQVSGMVLGAQQNNHLGWTSFLGEPEKKPFVTISVME

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9947	-	-

Protein sequence: 351 a.a.

						>T6CP003904 NC_013892:274297-275349 [Xenorhabdus bovienii SS-2004] [TssG]
MAGTDRSTLIDVITEQDPATPLALDISQYNFYQLVELLNQLAVAWEKTGETDRPDRESVRFRASASLAFPTRDVISLSQT
RRGYFELEVSFMGLHGSQSPMPGYYLDSLAWEEAQNENRLTDFLNLFNHRLITLLHQIWRKYRYYVCFKKGGEDHFSQRM
FSLVGLGSDVNRRMLNINHSKMLAYAGLLASPGRSPEVICSLVSHCFDLQDVTLHGWQFRKVTIPLDQQNRLGSERKGQV
IGDSKLSMLGQNFTIGSWVGDYSGKFLLSINNLTRDRFLSFLPDGKNYAPLVMFISFVMRSQFAWELRLGLAENQVSGMV
LGAQQNNHLGWTSFLGEPEKKPFVTISVME*					

Nucleotide sequence: 1053 bp

						>T6CP003904 NC_013892:274297-275349 [Xenorhabdus bovienii SS-2004] [TssG]
ATGGCCGGTACAGATAGGTCAACACTCATTGATGTAATCACTGAGCAAGATCCTGCCACACCCTTGGCATTGGACATTTC
ACAGTACAACTTTTATCAGTTGGTTGAGCTGCTCAATCAGCTGGCGGTAGCGTGGGAAAAAACGGGAGAGACCGATCGTC
CTGATCGTGAGTCTGTTCGTTTCAGAGCCAGTGCCAGTCTGGCATTTCCGACTCGTGACGTGATCTCACTCTCGCAGACC
AGACGGGGTTATTTTGAGCTGGAAGTCTCCTTTATGGGGCTACACGGCAGTCAGTCCCCGATGCCAGGTTACTATCTCGA
TTCGCTGGCTTGGGAAGAAGCGCAGAACGAAAACCGACTGACGGATTTTCTCAACCTGTTTAACCATCGCTTAATCACGC
TTCTGCATCAGATCTGGCGGAAATACCGCTATTACGTCTGCTTTAAGAAGGGGGGAGAAGATCATTTTTCTCAGCGCATG
TTTTCCCTTGTGGGTCTGGGGAGCGATGTCAACCGCCGGATGCTGAACATTAATCACAGCAAAATGCTGGCCTATGCAGG
GCTGCTGGCAAGCCCCGGCCGCTCGCCGGAAGTGATATGCAGTTTGGTTTCCCACTGTTTTGATTTACAGGATGTCACCC
TGCACGGCTGGCAATTCAGAAAGGTCACTATTCCCCTTGATCAGCAGAACCGCTTGGGAAGCGAAAGGAAAGGACAGGTA
ATCGGTGACTCTAAACTGTCCATGCTGGGGCAGAATTTCACCATTGGTTCATGGGTCGGCGATTACAGCGGGAAGTTCCT
TCTCAGCATCAATAATCTGACTCGTGATCGGTTCCTGTCTTTCCTGCCGGATGGAAAGAATTATGCCCCATTGGTGATGT
TTATTTCTTTCGTCATGCGCAGTCAATTTGCATGGGAATTGCGTCTTGGTCTGGCAGAAAATCAGGTCAGCGGCATGGTA
TTGGGGGCGCAGCAGAATAACCATCTGGGGTGGACTAGTTTTCTCGGCGAACCGGAAAAGAAACCTTTTGTCACAATTTC
AGTTATGGAATAA					